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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV305038 hCoV-19/Iraq/ICGEB-5T/2020 EPI_ISL_582030 RNA virus Severe acute respiratory syndrome coronavirus 2 Iraq 2020-06-30 human 29720 2020-10-15 Swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Biology Department, College of Science, Al-Muthanna University Samawa, Iraq Nihad Al-Rashedi, Danilo Licastro, Sreejith Rajasekharan, Simeone Dal Monego, Alessandro Marcello International Centre for Genetic Engineering and Biotechnology (ICGEB) and ARGO Open Lab Platform 5340x 29574 99.51
OEAV234155 hCoV-19/Belize/CDC-6840/2020 EPI_ISL_509711 RNA virus Severe acute respiratory syndrome coronavirus 2 Belize 2020-03-20 human 29882 2020-08-05 nasopharyngeal/oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Belize Ministry of Health East Bloc Building, Independence Plaza, Belmopan, Belize Jing Zhang, Ying Tao, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234156 hCoV-19/Belize/CDC-6846/2020 EPI_ISL_509712 RNA virus Severe acute respiratory syndrome coronavirus 2 Belize 2020-03-01 human 29882 2020-08-05 nasopharyngeal/oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Belize Ministry of Health East Bloc Building, Independence Plaza, Belmopan, Belize Jing Zhang, Ying Tao, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234157 hCoV-19/Belize/CDC-6851/2020 EPI_ISL_509713 RNA virus Severe acute respiratory syndrome coronavirus 2 Belize 2020-03-27 human 29873 2020-08-05 nasopharyngeal/oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Belize Ministry of Health East Bloc Building, Independence Plaza, Belmopan, Belize Jing Zhang, Ying Tao, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29873 100.00
OEAV234158 hCoV-19/Belize/CDC-6852/2020 EPI_ISL_509714 RNA virus Severe acute respiratory syndrome coronavirus 2 Belize 2020-04-09 human 29882 2020-08-05 nasopharyngeal/oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Belize Ministry of Health East Bloc Building, Independence Plaza, Belmopan, Belize Jing Zhang, Ying Tao, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29880 99.99
OEAV234173 hCoV-19/Guatemala/CDC-1227/2020 EPI_ISL_509695 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-13 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234174 hCoV-19/Guatemala/CDC-1228/2020 EPI_ISL_509696 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-15 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234175 hCoV-19/Guatemala/CDC-1229/2020 EPI_ISL_509710 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-15 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Jing Zhang, Ying Tao, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29881 100.00
OEAV234176 hCoV-19/Guatemala/CDC-1230/2020 EPI_ISL_509697 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-15 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234177 hCoV-19/Guatemala/CDC-1231/2020 EPI_ISL_509698 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-15 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234178 hCoV-19/Guatemala/CDC-1232/2020 EPI_ISL_509699 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-17 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234179 hCoV-19/Guatemala/CDC-1233/2020 EPI_ISL_509700 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-18 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234180 hCoV-19/Guatemala/CDC-1234/2020 EPI_ISL_509701 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-19 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234181 hCoV-19/Guatemala/CDC-1235/2020 EPI_ISL_509702 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-20 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV234182 hCoV-19/Guatemala/CDC-1236/2020 EPI_ISL_509703 RNA virus Severe acute respiratory syndrome coronavirus 2 Guatemala 2020-03-21 human 29882 2020-08-05 nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Guatemala Ministry of Public Health 3-45, Ga Avenida 3, In Hospital Roosevelt Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 20X 29882 100.00
OEAV192889 hCoV-19/Ecuador/USFQ-004/2020 EPI_ISL_477014 RNA virus Severe acute respiratory syndrome coronavirus 2 Ecuador 2020-03-30 human 29903 2020-06-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Institute of Microbiology, Universidad San Francisco de Quito Diego de Robles SN y Via Interoceanica, Campus Cumbaya Belen Prado-Vivar, Sully Marquez, Juan Jose Guadalupe, Monica Becerra-Wong, Carla Torres, Bernardo Gutierrez, Francisco Mora, Juan Gaviria, Alejandra Ramones, Franklin Espinoza, Edison Ligña, Jorge Reyes, Patricio Rojas-Silva, Veronica Barragan, Gabriel Trueba, Michelle Grunauer, Paul Cardenas Institute of Microbiology, Universidad San Francisco de Quito 200x 29765 99.54
OEAV192890 hCoV-19/Ecuador/USFQ-096/2020 EPI_ISL_477015 RNA virus Severe acute respiratory syndrome coronavirus 2 Ecuador 2020-06-17 human 29903 2020-06-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Institute of Microbiology, Universidad San Francisco de Quito Campus Cumbayá, Diego de Robles s/n, Quito 170901 Ecuador Sully Márquez, Belén Prado-Vivar, Juan José Guadalupe, Monica Becerra-Wong, Carla Torres, Bernardo Gutiérrez, Jorge Luis Velez, Verónica Barragán, Patricio Rojas-Silva, Gabriel Trueba, Michelle Grunauer, Paúl Cárdenas Institute of Microbiology, Universidad San Francisco de Quito 200x 29811 99.69
OEAV192891 hCoV-19/Ecuador/USFQ-097/2020 EPI_ISL_477016 RNA virus Severe acute respiratory syndrome coronavirus 2 Ecuador 2020-06-17 human 29903 2020-06-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Institute of Microbiology, Universidad San Francisco de Quito Campus Cumbayá, Diego de Robles s/n, Quito 170901 Ecuador Juan José Guadalupe, Sully Márquez, Belén Prado-Vivar, Monica Becerra-Wong, Carla Torres, Bernardo Gutiérrez, Jorge Luis Velez, Verónica Barragán, Patricio Rojas-Silva, Gabriel Trueba, Michelle Grunauer, Paúl Cárdenas Institute of Microbiology, Universidad San Francisco de Quito 200x 29848 99.82
OEAV194327 hCoV-19/Senegal/57481/2020 EPI_ISL_476150 RNA virus Severe acute respiratory syndrome coronavirus 2 Senegal 2020-06-06 human 29904 2020-06-25 Oro-naso-pharyngeal swabs 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Institut Pasteur Dakar 36, avenue Pasteur 221 Dakar Senegal Ndongo Dia, Moussa Moise Diagne, Mamadou diop, Ousmane Faye, Amadou Alpha Sall Institut Pasteur de Dakar 27031 90.39
OEAV194328 hCoV-19/Senegal/57499/2020 EPI_ISL_476151 RNA virus Severe acute respiratory syndrome coronavirus 2 Senegal 2020-06-09 human 29903 2020-06-25 Oro/naso-pharyngeal swabs 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Institut Pasteur Dakar 36, avenue Pasteur 221 Dakar Senegal Ndongo Dia, Moussa Moise Diagne, Mamadou Diop, Ousmane faye, Amadou Alpha Sall Institut Pasteur de Dakar 27630 92.40
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