OEAV1470671
hCoV-19/bat/Yunnan/RmYN05/2020
EPI_ISL_1699445
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-05-25
Rhinolophus malayanus
29712
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29712
100.00
OEAV1470672
hCoV-19/bat/China/RmYN07/2020
EPI_ISL_1699447
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-06-03
Rhinolophus malayanus
29734
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29734
100.00
OEAV1470673
hCoV-19/bat/Yunnan/RmYN08/2020
EPI_ISL_1699448
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-07-14
Rhinolophus malayanus
29712
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29712
100.00
OEAV1470674
hCoV-19/bat/Yunnan/RsYN03/2019
EPI_ISL_1699443
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2019-10-22
Rhinolophus sinicus
29737
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29737
100.00
OEAV1470675
hCoV-19/bat/Yunnan/RsYN04/2020
EPI_ISL_1699444
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-04-18
Rhinolophus stheno
29712
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29712
100.00
OEAV1470676
hCoV-19/bat/Yunnan/RpYN06/2020
EPI_ISL_1699446
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-05-25
Rhinolophus pusillus
29793
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29793
100.00
OEAV1470677
hCoV-19/bat/Yunnan/RsYN09/2020
EPI_ISL_1699449
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-07-28
Rhinolophus stheno
29717
2021-04-23
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Yingshengdonglu 2, Taian 271000, Shandong, China
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29717
100.00
OEAV15212071
hCoV-19/bat/Yunnan/RsYN06/2020
EPI_ISL_1663616
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2020-05-25
Rhinolophus pusillus
29794
2021-04-20
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Shandong First Medical University & Shandong Academy of Medical Sciences
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
Shandong First Medical University & Shandong Academy of Medical Sciences
29794
100.00
OEAV20894226
hCoV-19/bat/Malaysia/UMK-R63/2021
EPI_ISL_16871868
RNA virus
Severe acute respiratory syndrome coronavirus 2
Malaysia
2021-08-23
Chiroptera
145
2022-12-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M., Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M.
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
145
100.00
OEAV20894227
hCoV-19/bat/Malaysia/UMK-S07/2021
EPI_ISL_16871871
RNA virus
Severe acute respiratory syndrome coronavirus 2
Malaysia
2021-08-14
Chiroptera
120
2022-12-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A.B., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M., Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A.B., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M.
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
120
100.00
OEAV20894228
hCoV-19/bat/Malaysia/UMK-S11/2021
EPI_ISL_16871870
RNA virus
Severe acute respiratory syndrome coronavirus 2
Malaysia
2021-08-14
Chiroptera
120
2022-12-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A.B., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M., Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A.B., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M.
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
120
100.00
OEAV20894229
hCoV-19/bat/Malaysia/UMK-S13/2021
EPI_ISL_16871869
RNA virus
Severe acute respiratory syndrome coronavirus 2
Malaysia
2021-08-14
Chiroptera
120
2022-12-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A.B., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M., Mohamed, M., Gilbert, B., Choong, S.S., Baqi, A.B., Noralidin, A., Manaf, A., Reduan, F.H., Kumaran, J.V., Tan, L.P., Jusoh, M.
Universiti Malaysia Kelantan - Paraclinical Department - Faculty of Veterinary Medicine
120
100.00
OEAV577864
hCoV-19/bat/Cambodia/RShSTT182/2010
EPI_ISL_852604
RNA virus
Severe acute respiratory syndrome coronavirus 2
Cambodia
2010-12-06
Rhinolophus shameli
29787
2021-01-20
Feces
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Virology Unit, Institut Pasteur du Cambodge
5 Monivong Blvd, PO Box 983 120210, Phnom Penh, Cambodia
Vibol Hul, Deborah Delaune, Erik A Karlsson, Ou Tey Putita, Alexandre Hassanin, Artem Baidaliuk, Fabiana Gámbaro, Vuong Tan Tu, Lucy Keatts, Jonna Mazet, Christine Johnson, Philippe Buchy, Philippe Dussart, Tracey Goldstein, Etienne Simon-Lorière, Veasna Duong
G5 Evolutionary Genomics of RNA viruses, Virology Department, Institut Pasteur
404x
29787
100.00
OEAV6922381
hCoV-19/bat/Italy/LAZ-UCBM-49/2021
EPI_ISL_3101985
RNA virus
Severe acute respiratory syndrome coronavirus 2
Italy
2021-07-19
Rhinolophus affinis
29800
2021-07-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Ospedale San Pietro Fatebenefratelli Rome
Riva E., De Florio L., Fogolari M., Francesconi M., Lintas C., Veralli R., Angeletti S.
University Campus Bio-Medico of Rome (UCBM)
29800
100.00
OEAV6922382
hCoV-19/bat/Laos/BANAL-103/2020
EPI_ISL_4302645
RNA virus
Severe acute respiratory syndrome coronavirus 2
Laos
2020-07-07
Rhinolophus pusillus
29632
2021-08-27
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
The Institut Pasteur du Laos
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M.
Pathogen Discovery Laboratory, Institut Pasteur
29632
100.00
OEAV6922383
hCoV-19/bat/Laos/BANAL-116/2020
EPI_ISL_4302646
RNA virus
Severe acute respiratory syndrome coronavirus 2
Laos
2020-07-07
Rhinolophus malayanus
29437
2021-08-27
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
The Institut Pasteur du Laos
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M.
Pathogen Discovery Laboratory, Institut Pasteur
29437
100.00
OEAV6922384
hCoV-19/bat/Laos/BANAL-236/2020
EPI_ISL_4302647
RNA virus
Severe acute respiratory syndrome coronavirus 2
Laos
2020-07-10
Rhinolophus marshalli
30024
2021-08-27
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
The Institut Pasteur du Laos
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M.
Pathogen Discovery Laboratory, Institut Pasteur
30024
100.00
OEAV6922385
hCoV-19/bat/Laos/BANAL-247/2020
EPI_ISL_4302648
RNA virus
Severe acute respiratory syndrome coronavirus 2
Laos
2020-07-10
Rhinolophus malayanus
29645
2021-08-27
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
The Institut Pasteur du Laos
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M.
Pathogen Discovery Laboratory, Institut Pasteur
29645
100.00
OEAV6922386
hCoV-19/bat/Laos/BANAL-52/2020
EPI_ISL_4302644
RNA virus
Severe acute respiratory syndrome coronavirus 2
Laos
2020-07-05
Rhinolophus malayanus
29838
2021-08-27
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
The Institut Pasteur du Laos
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M.
Pathogen Discovery Laboratory, Institut Pasteur
29838
100.00
OEAV955879
hCoV-19/bat/Yunnan/PrC31/2018
EPI_ISL_1098866
RNA virus
Severe acute respiratory syndrome coronavirus 2
China
2021-01-30
Rhinolophus bat
29749
2021-03-01
Feces
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
GISAID
Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China;
Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China;
Lili Li
Diarrhea department, National Institute for Viral Disease Control and Prevention, China CDC
29743
99.98