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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV000272 hCoV-19/bat/Yunnan/RaTG13/2013 EPI_ISL_402131 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2013-07-24 Rhinolophus affinis 29855 2020-01-24 Fecal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wuhan Institute of Virology, Chinese Academy of Sciences 44 Xiao Hong Shan, Wuhan, Hubei 430071 Yan Zhu, Ping Yu, Bei Li, Ben Hu, Hao-Rui Si, Xing-Lou Yang, Peng Zhou, Zheng-Li Shi Wuhan Institute of Virology, Chinese Academy of Sciences 29855 100.00
OEAV013420 Bat coronavirus RaTG13 MN996532 RNA viruses Bat coronavirus RaTG13 China 2013-07-24 Rhinolophus affinis 29855 2020-01-29 feces 2709072 Bat coronavirus RaTG13 Coronaviridae NCBI Virus/Genbank Zhu,Y., Yu,P., Li,B., Hu,B., Si,H.R., Yang,X.L., Zhou,P. and Shi,Z.L. CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences 29855 100.00
OEAV013482 Bat picornavirus strain ITA/2017/189/18-155 MN602325 RNA viruses Bat picornavirus Italy 2017-01-01 Pipistrellus pipistrellus 8208 2020-02-25 1281456 Aichivirus F Kobuvirus Picornaviridae NCBI Virus/Genbank Diakoudi,G., Jamnikar Ciglenecki,U., Lanave,G., Lelli,D., Martella,V. and Kuhar,U. Veterinary Medicine, University of Bari Aldo Moro 8208 100.00
OEAV054516 Hipposideros pomona bat coronavirus CHB25 isolate CHB0025 MN611525 RNA viruses Hipposideros pomona bat coronavirus CHB25 China 2018-03-01 Hipposideros larvatus 28169 2019-12-31 2691598 Hipposideros pomona bat coronavirus CHB25 Alphacoronavirus Coronaviridae NCBI Virus/Genbank Li,B., Si,H.R., Zhu,Y., Yang,X.L., Anderson,D.E., Shi,Z.L., Wang,L.F. and Zhou,P. CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences 28169 100.00
OEAV088015 Miniopterus pusillus bat coronavirus HKU8-related isolate 6610 MN611518 RNA viruses Miniopterus pusillus bat coronavirus HKU8-related China 2018-03-01 Miniopterus pusillus 28751 2019-12-31 2691587 Miniopterus pusillus bat coronavirus HKU8-related Alphacoronavirus Coronaviridae NCBI Virus/Genbank Li,B., Si,H.R., Zhu,Y., Yang,X.L., Anderson,D.E., Shi,Z.L., Wang,L.F. and Zhou,P. CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences 28751 100.00
OEAV088019 Miniopterus schreibersii bat coronavirus 1-related isolate 161454 MN611524 RNA viruses Miniopterus schreibersii bat coronavirus 1-related China 2018-03-01 Miniopterus schreibersii 28316 2019-12-31 2691588 Miniopterus schreibersii bat coronavirus 1-related Alphacoronavirus Coronaviridae NCBI Virus/Genbank Li,B., Si,H.R., Zhu,Y., Yang,X.L., Anderson,D.E., Shi,Z.L., Wang,L.F. and Zhou,P. CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences 28316 100.00
OEAV104969 Pipistrellus bat coronavirus HKU5 isolate BY140535 MH002340 RNA viruses Pipistrellus bat coronavirus HKU5 China 2014-06-26 30494 2020-03-01 694008 Pipistrellus bat coronavirus HKU5 Betacoronavirus Coronaviridae NCBI Virus/Genbank Luo,C.M., Wang,N., Zhang,W., Li,B. and Shi,Z.L. Wuhan Institute of Virology 30494 100.00
OEAV104970 Pipistrellus bat coronavirus HKU5 isolate BY140562 MH002341 RNA viruses Pipistrellus bat coronavirus HKU5 China 2014-06-28 30480 2020-03-01 694008 Pipistrellus bat coronavirus HKU5 Betacoronavirus Coronaviridae NCBI Virus/Genbank Luo,C.M., Wang,N., Zhang,W., Li,B. and Shi,Z.L. Wuhan Institute of Virology 30480 100.00
OEAV104971 Pipistrellus bat coronavirus HKU5 isolate YD13403 MH002342 RNA viruses Pipistrellus bat coronavirus HKU5 China 2013-06-03 30529 2020-03-01 694008 Pipistrellus bat coronavirus HKU5 Betacoronavirus Coronaviridae NCBI Virus/Genbank Luo,C.M., Wang,N., Zhang,W., Li,B. and Shi,Z.L. Wuhan Institute of Virology 30529 100.00
OEAV118077 Rousettus aegyptiacus bat coronavirus 229E-related isolate 5425 MN611517 RNA viruses Rousettus aegyptiacus bat coronavirus 229E-related Kenya 2018-03-01 Rousettus aegyptiacus 27619 2019-12-31 2691585 Rousettus aegyptiacus bat coronavirus 229E-related Alphacoronavirus Coronaviridae NCBI Virus/Genbank Li,B., Si,H.R., Zhu,Y., Yang,X.L., Anderson,D.E., Shi,Z.L., Wang,L.F. and Zhou,P. CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences 27619 100.00
OEAV132165 Tylonycteris bat coronavirus HKU4 isolate CZ01 MH002337 RNA viruses Tylonycteris bat coronavirus HKU4 China 2012-11-01 30255 2020-03-01 694007 Tylonycteris bat coronavirus HKU4 Betacoronavirus Coronaviridae NCBI Virus/Genbank Luo,C.M., Wang,N., Zhang,W., Li,B. and Shi,Z.L. Wuhan Institute of Virology 30254 100.00
OEAV132166 Tylonycteris bat coronavirus HKU4 isolate CZ07 MH002338 RNA viruses Tylonycteris bat coronavirus HKU4 China 2012-11-01 30252 2020-03-01 694007 Tylonycteris bat coronavirus HKU4 Betacoronavirus Coronaviridae NCBI Virus/Genbank Luo,C.M., Wang,N., Zhang,W., Li,B. and Shi,Z.L. Wuhan Institute of Virology 30252 100.00
OEAV132167 Tylonycteris bat coronavirus HKU4 isolate SZ140324 MH002339 RNA viruses Tylonycteris bat coronavirus HKU4 China 2014-04-23 30280 2020-03-01 694007 Tylonycteris bat coronavirus HKU4 Betacoronavirus Coronaviridae NCBI Virus/Genbank Luo,C.M., Wang,N., Zhang,W., Li,B. and Shi,Z.L. Wuhan Institute of Virology 30280 100.00
OEAV132168 Tylonycteris pachypus bat coronavirus HKU4-related isolate GZ131656 MN611519 RNA viruses Tylonycteris pachypus bat coronavirus HKU4-related China 2018-03-01 Tylonycteris pachypus 30224 2019-12-31 2691589 Tylonycteris pachypus bat coronavirus HKU4-related Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,B., Si,H.R., Zhu,Y., Yang,X.L., Anderson,D.E., Shi,Z.L., Wang,L.F. and Zhou,P. CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences 30224 100.00
OEAV140837 ZV2011 segment L MN823639 RNA viruses Zwiesel bat banyangvirus Germany 2011-01-01 Eptesicus nilssonii 6277 2020-02-10 heart, feces, abdominal cavity, lung 2706560 Zwiesel bat banyangvirus Banyangvirus Phenuiviridae NCBI Virus/Genbank Kohl,C., Brinkmann,A., Radonic,A., Dabrowski,P.W., Nitsche,A., Muhldorfer,K., Wibbelt,G. and Kurth,A. Centre for Biological Security, Robert Koch Institute 6275 99.97
OEAV140838 ZV2011 segment M MN823640 RNA viruses Zwiesel bat banyangvirus Germany 2011-01-01 Eptesicus nilssonii 3434 2020-02-10 heart, feces, abdominal cavity, lung 2706560 Zwiesel bat banyangvirus Banyangvirus Phenuiviridae NCBI Virus/Genbank Kohl,C., Brinkmann,A., Radonic,A., Dabrowski,P.W., Nitsche,A., Muhldorfer,K., Wibbelt,G. and Kurth,A. Centre for Biological Security, Robert Koch Institute 3432 99.94
OEAV140839 ZV2011 segment S MN823641 RNA viruses Zwiesel bat banyangvirus Germany 2011-01-01 Eptesicus nilssonii 1793 2020-02-10 heart, feces, abdominal cavity, lung 2706560 Zwiesel bat banyangvirus Banyangvirus Phenuiviridae NCBI Virus/Genbank Kohl,C., Brinkmann,A., Radonic,A., Dabrowski,P.W., Nitsche,A., Muhldorfer,K., Wibbelt,G. and Kurth,A. Centre for Biological Security, Robert Koch Institute 1792 99.94
OEAV158858 hCoV-19/bat/Yunnan/RmYN01/2019 EPI_ISL_412976 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2019-06-25 Rhinolophus malayanus 27679 2020-03-02 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Shandong First Medical University & Shandong Academy of Medical Sciences Yingshengdonglu 2, Taian 271000, Shandong, China Weifeng Shi, Tao Hu, Hong Zhou, Juan Li, Xing Chen, Alice Catherine Hughes, Yuhai Bi Institute of Microbiology, Chinese Academy of Sciences 22254 80.40
OEAV158859 hCoV-19/bat/Yunnan/RmYN02/2019 EPI_ISL_412977 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2019-06-25 Rhinolophus malayanus 29671 2020-03-02 Faeces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Shandong First Medical University & Shandong Academy of Medical Sciences Yingshengdonglu 2, Taian 271000, Shandong, China Weifeng Shi, Tao Hu, Hong Zhou, Juan Li, Xing Chen, Alice Catherine Hughes, Yuhai Bi Institute of Microbiology, Chinese Academy of Sciences 29671 100.00
OEAV577865 hCoV-19/bat/Cambodia/RShSTT200/2010 EPI_ISL_852605 RNA virus Severe acute respiratory syndrome coronavirus 2 Cambodia 2010-12-06 Rhinolophus shameli 29793 2021-01-20 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Virology Unit, Institut Pasteur du Cambodge 5 Monivong Blvd, PO Box 983 120210, Phnom Penh, Cambodia Vibol Hul, Deborah Delaune, Erik A Karlsson, Ou Tey Putita, Alexandre Hassanin, Artem Baidaliuk, Fabiana Gámbaro, Vuong Tan Tu, Lucy Keatts, Jonna Mazet, Christine Johnson, Philippe Buchy, Philippe Dussart, Tracey Goldstein, Etienne Simon-Lorière, Veasna Duong G5 Evolutionary Genomics of RNA viruses, Virology Department, Institut Pasteur 68,000x 29793 100.00
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