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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV17097654 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AF10857/2021 ON811400 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-12-14 Homo sapiens 29684 2022-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Garrigues,J.M., Hemarajata,P. and Green,N.M. Los Angeles County Public Health Laboratories, Los Angeles County Public Health Lab microbial pathogen submission group 29684 100.00
OEAV17100684 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CO-CDC-QDX37596377/2022 ON817622 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29709 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29709 100.00
OEAV17121696 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NC-CDC-QDX37549019/2022 ON817446 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29724 100.00
OEAV17121701 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NC-CDC-QDX37549029/2022 ON817586 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29724 100.00
OEAV17121712 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NC-CDC-QDX37549063/2022 ON817526 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29724 100.00
OEAV17132035 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-CDC-QDX37548849/2022 ON817508 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29724 100.00
OEAV17132079 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-CDC-QDX37549094/2022 ON817480 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29724 100.00
OEAV17132189 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3255/2022 ON815324 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-08 Homo sapiens 29709 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29709 100.00
OEAV17132191 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3260/2022 ON815337 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-08 Homo sapiens 29709 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29709 100.00
OEAV17132192 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3265/2022 ON815328 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-07 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29724 100.00
OEAV17132193 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3266/2022 ON815329 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-07 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29724 100.00
OEAV17132195 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3269/2022 ON815327 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-09 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29665 99.80
OEAV17132196 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3270/2022 ON815341 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-09 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29644 99.73
OEAV17132199 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3273/2022 ON815332 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-10 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29724 100.00
OEAV17132200 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3274/2022 ON815342 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-10 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29643 99.73
OEAV17132201 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3275/2022 ON815304 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-10 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29652 99.76
OEAV17132204 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3279/2022 ON815320 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-09 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29724 100.00
OEAV17132205 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3280/2022 ON815300 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-09 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29724 100.00
OEAV17132210 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-COVID22-3288/2022 ON815308 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-06-09 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Freeman,J.S., Lee,B. and Godfrey,G. South Carolina Dept. of Health & Environmental Control, CoV_South Carolina Dept. of Health & Environmental Control 29675 99.84
OEAV17134369 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TX-CDC-QDX37596391/2022 ON817645 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-05-31 Homo sapiens 29724 2022-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Howard,D., Batra,D., Cook,P.W., Caravas,J., Rambo-Martin,B., Sammons,S., Unoarumhi,Y., Schmerer,M., Lacek,K.A., Kendall,T., Caban Figueroa,V., Morrison,S., Gulvick,C., Sula,E., Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Hua,M., Liu,Y., Bernstein,L.E., Livingston,K.E., Perez,A., Shlyakhter,I.A., Rolando,R.V., Owen,R., Tanpaiboon,P., Lacbawan,F., Paden,C.R. and MacCannell,D. Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29724 100.00
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