| * Scientific Name | | Scientific name
e.g. Zeaxanthinibacter enoshimensis [genus name + species name, a blank between genus name and species name] | |
| * Strain Name | | Strain name
e.g. JHH-2T; KCCM 92030T; JCM 19228T | |
| * Type | CV | Type strain or not
e.g. type strain choose positive, while nontype strain choose negative | negative | positive |
| ANI | |
The value of fastANI identification for the strain with the existing species name, for more detail please check https://github.com/ParBLiSS/FastANI | |
| ANI reference | |
Genome ID used for calculating the FastANI. | |
| Domian | | | |
| Phylum | | | |
| Class | | | |
| Order | | | |
| Family | | | |
| Genus | | | |
| Species | | | |
| Other note | | | |
| MID | | Unique ID in eLMSG
e.g. M010301010101001 | |
| eLMSG Rank | | Rank of the organism in taxonomic tree of eLMSG
e.g. Species | |
| Etymology | | Name origins of the organism
e.g. en.o.shi.men'sis. N.L. masc. adj. enoshimensis pertaining to Enoshima Island in Japan, where the type strain was isolated | |
| Submitter | | The submitting consortium or first position if a list of organizations
e.g. Chinese National Human Genome Center at Shanghai | |
| Data source | CV | Data source of the metagenome, for example Newly sequenced, Public sequenced. | Newly sequenced | Public sequenced |
| Dataset ID | |
Metagenome ID for the binning of the MAG,for example if your metagenome is disposit in NODE database (https://www.biosino.org/node/), you can fill here as following:
[database name+":"+ID in the database],eg NODE:OEP000073
if you have more than one ID, you can fill as following:
[database name+":"+ID in the database]+","+[database name+":"+ID in the database], eg NODE:OEP000073,NODE:OEP000074,NODE:OEP000074 | |
| Assembled method | CV | The method for the assembly of the MAG.For example, Megahit, meta-SPAdes. | Megahit | meta-SPAdes |
| Coverage | | The coverage of the assembly
e.g. 30 | |
| Assembly status | CV | The current status for the assembly are shown
e.g. complete genome | complete genome | contig | scaffold | chromosome |
| Assembly class | | Mostly haploid assembly, means the collection of chromosome assemblies, unlocalized and unplaced sequences that represent an organism's genome
e.g. haploid | |
| * Completeness | |
The coverage of the marker genes for this MAG, for example 91%. | |
| * Contanmination | |
The contanmination level of the MAG, for example 3%. | |
| * Genome size (bp) | |
The genome size of the MAG, for example 1000,000 | |
| * GC content | |
GC content of the MAG, for example 60%. | |
| * N50 | |
The read length at which 50% of the bases are in subreads (or polymerase reads) longer than, or equal to, this value. | |
| * Contig number | |
The total number of contig for assembly of the MAG, for example 500.
| |
| * MAG file name | | Rawdata file name
e.g.Zeaxanthinibacter enoshimensis_JHH-2T.fasta [scientific name+"_"+strain name+"."+fasta | |
| Review period | |
In the condition that the author would like to keep the rawdata private, the author have to provide the days that paper will be reviewed by the reviewer.
For example, if you input 90, the system will automatically keep this data private for 90 days. | |
| * MAG security | CV | The rawdata for genome
e.g. public | public | private |
| id | | Genome ID in eLMSG
eg. LMSG_G000000183.1 | |
| code | | | |
| filename | | | |
| Scientific Name | | Scientific name of the organism
e.g. Amycolatopsis eurytherma [genus name + species name, a blank between genus name and species name] | |
| Submitter date | | The time when the assembly was submitted [YYYY/MM/DD]
e.g. 2012/10/12 | |
| Update date | | The time when the assembly was updated [YYYY/MM/DD]
e.g. 2012/10/12 | |
| Strain Name | | Name of the strain was sequenced
e.g. JHH-2T; KCCM 92030T; JCM 19228T | |
| Cross-references | | Cross-references to other databases,for example if you want to put cross-references to the NODE database (https://www.biosino.org/node/), you can fill here as following:
[database name+":"+ID in the database],eg NODE:OEP000073
if you have more than one ID, you can fill as following:
[database name+":"+ID in the database]+","+[database name+":"+ID in the database], eg NODE:OEP000073,NODE:OEP000074,NODE:OEP000074 | |
| * Sample name | | Unique name of each sample, which identical to the sample name in "eLMSG_v5.0_MAG_Environment_Metagenomic-mod.xlsx" | |
| References | | Publications related to this organism. The format of the reference should be the same as the format of NCBI pubmed. General format template for a reference to a journal article: Author Surname, Author Initial. Article Title. Journal Title. Date of Publication; Volume(Issue) Pagination. If you need more detail, please refer to https://www.ncbi.nlm.nih.gov/books/NBK7282/. | |
