Sequencing Type: The provided example data is for Paired-End (PE) sequencing libraries.
Required Files: A total of 4 files must be uploaded to run the example: two FASTQ files (R1 and R2) for each of the two samples.
Sample IDs: The corresponding Sample IDs for this dataset are:
CCMD19168690ST-11-0
CCMD46727384ST-11-0
Analysis Configuration
You can configure the analysis pipeline in two ways depending on your goal:
1. To Replicate Full Example Results:
This configuration runs the complete analysis pipeline to match the pre-computed example results.
Quality Control: Keep Quality Control enabled (do not check "Skip Quality Control").
Variant Calling: Select all main variant types (SNP, INDEL, and SV) and their respective sub-options.
2. For a Quick Test Run:
This is the fastest configuration to verify that the pipeline is working correctly.
Quality Control: Skip Quality Control (check the "Skip Quality Control" switch).
Variant Calling: Select only the INDEL variant type.