Scan input genomic regions with known DNA motifs
Given a set of input genomic regions, MotifScan scans the sequences to detect the occurrences of known motifs. It can also applies a statistical test on each motif to check whether the motif is significantly over- or under-represented (enriched or depleted) in the input genomic regions compared to another set of control regions.
This web toolkit is a user-friendly interface based on the scan command of the command-line version of MotifScan.
You may download sample input here or check out sample outputs here. To use the sample input, please upload it as the region file and select "hg19" for the genome name.
You will receive a link to the page that will later allow you to download all the output data as a zip file.
Note: Due to the uncertainty of computation workload, the waiting time is not garuanteed.