General Information
- Analysis ID
- OEZ005256
- Analysis Name
- UQ_RSEM
- Description
- We use STAR aligner (v2.4.2a) to map reads to UCSC human reference genome hg19 and reference transcriptome GENCODE(v19), and then generate the gene expression abundance matrix using RSEM followed by Upper Quartile Normalization within-sample. UQ-FPKM represents an upper quartile normalization of Fragments Per Kilobase of transcript per Million mapped reads(FPKM); Gene symbol conversion, log2-transformed, and batch effect removal steps were not processed.
Analysis Information
Target
Analysis Data
ID | Name | Data Type | Upload Time | Comment | Security | MD5 | Download |
---|---|---|---|---|---|---|---|
OED094052 | HCC_UQ_RSEM.tsv | 2019-10-28 16:30:30 | Public | 91c21655fd75ffd866e6b856a0923b45 |
Submitter Information
- Create Date
- 2019-10-28
- Last Modified
- 2019-10-28
- Submission
- Liangqing Dong