DescriptionThe raw reads were decoded by ST_BarcodeMap (version 0.0.1), filtered adapter sequence by Fastp, and then aligned to the reference genome GRCh38.p12(Human) via STAR. Mapped reads were annotated, then calculated by HandleBam(version 1.0.0). The raw matrix was converted into the bin50-level matrix (i.e., 25*25um) by the Seurat R package(version 4.2.0). For quality control, the median number of gene types per bin50 for all chips should be over 500.
Analysis typeOther
OEZ013918
DescriptionThe raw reads were decoded by ST_BarcodeMap (version 0.0.1), filtered adapter sequence by Fastp, and then aligned to the reference genome GRCh38.p12(Human) via STAR. Mapped reads were annotated, then calculated by HandleBamz(version 1.0.0). Single-cell segmentation of Stereo-seq data is performed by a self-written algorithm.
Analysis typeOther
OEZ013917
DescriptionData were aligned to the human genome (hg38), and the fragment files were achieved using the default parameters of DNBelab C4 snATAC-seq (version v3.0, BGI). Doublet removal, iterative latent semantic indexing (LSI) dimensionality reduction, initial clustering, and snATAC-se-snRNA-seq data integration were performed using ArchR(v1.0).
Analysis typeOther
OEZ013916
DescriptionMissing quantitative values were imputed using the K-nearest neighbor (KNN) algorithm in the DreamAI R package (v0.1.0).
Analysis typeOther
OEZ013907
DescriptionA total of 271 unresolved IRD patients and their available family members (n=646) were screened using WGS technology to identify pathogenic SVs and intronic variants in 792 known ocular disease genes. The pathogenicity of all identified variants was evaluated through a combination of factors including allele frequencies (AFs) in the general population, functional annotation, and inheritance pattern analysis.
Analysis typeDe Novo Assembly
OEZ014524
DescriptionxQTL summary data for SNPs associated with selected M3S markers from methylation, metabolite and microbiota data
Analysis typeOther
OEZ014452
Analysis typeOther
OEZ013891
DescriptionThis is the pooled reference genomes composed of 10 selected strains (Mock-Ref) used in MT-Enviro.
Analysis typeReference Alignment
OEZ013255
Analysis typeOther
OEZ014373
DescriptionmRNA expression data of Wilm's tumor cell line after knockdown of EHMT2. Each experiment has three replications.
Analysis typeOther
OEZ014371