DescriptionViral sequences identified from metagenomes and genomes data across global acid mine drainage.
Analysis typeSequence Annotation
OEZ008166
DescriptionSMAG catalog
Analysis typeOther
OEZ014109
Analysis typeOther
OEZ014114
DescriptionSummary statistic of hair whorl direction
Analysis typeOther
OEZ013261
Analysis typeSequence Annotation
OEZ014102
Analysis typeAbundance Measurement
OEZ014100
DescriptionRaw sequencing data were first trimmed to remove adaptors and low-quality reads using TrimGalore-0.5.0 with the following parameter settings: -q 25 --phred33 --length 35 -e 0.1 --stringency. Trimmed files were then mapped to hg19 genome utilizing Bowtie2. Sambamba_v0.6.6 was conducted for the removal of duplicates. DeepTools-3.2.1 was then performed using the function of bamCoverage to generate normalized CPM.bw files.
Analysis typeDe Novo Assembly
OEZ009048
DescriptionRaw sequencing data were first trimmed to remove adaptors and low-quality reads using TrimGalore-0.5.0 with the following parameter settings: -q 25 --phred33 --length 35 -e 0.1 --stringency. Trimmed files were then mapped to hg19 genome utilizing Bowtie2. Sambamba_v0.6.6 was conducted for the removal of duplicates. DeepTools-3.2.1 was then performed using the function of bamCoverage to generate normalized CPM.bw files.
Analysis typeDe Novo Assembly
OEZ009047
DescriptionRaw sequencing data were first trimmed to remove adaptors and low-quality reads using TrimGalore-0.5.0 with the following parameter settings: -q 25 --phred33 --length 35 -e 0.1 --stringency. Trimmed files were then mapped to hg19 genome utilizing Bowtie2. Sambamba_v0.6.6 was conducted for the removal of duplicates. DeepTools-3.2.1 was then performed using the function of bamCoverage to generate normalized CPM.bw files.
Analysis typeDe Novo Assembly
OEZ009045
DescriptionMACS2-2.1.1 was then utilized with -q 0.05 parameter setting for peak calling.
Analysis typeDe Novo Assembly
OEZ009044