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  • gene_express

    fan wang, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, 2023.06.18

    Analysis type

    Other

    OEZ014114

  • OEZ_2303021024

    Junyu Luo, Shanghai Institute of Nutrition and Health, 2023.03.02

    Description

    Summary statistic of hair whorl direction

    Analysis type

    Other

    OEZ013261

  • OEZ_YUCHEN_2306051803

    Ran LIU, , 2023.06.05

    Analysis type

    Sequence Annotation

    OEZ014102

  • OEZ_YUCHEN_2306051752

    Ran LIU, , 2023.06.05

    Analysis type

    Abundance Measurement

    OEZ014100

  • ATAC_CPM_PRMTi1061

    Fei Li, , 2022.05.25

    Description

    Raw sequencing data were first trimmed to remove adaptors and low-quality reads using TrimGalore-0.5.0 with the following parameter settings: -q 25 --phred33 --length 35 -e 0.1 --stringency. Trimmed files were then mapped to hg19 genome utilizing Bowtie2. Sambamba_v0.6.6 was conducted for the removal of duplicates. DeepTools-3.2.1 was then performed using the function of bamCoverage to generate normalized CPM.bw files.

    Analysis type

    De Novo Assembly

    OEZ009048

  • ATAC_CPM_SPM

    Fei Li, , 2022.05.25

    Description

    Raw sequencing data were first trimmed to remove adaptors and low-quality reads using TrimGalore-0.5.0 with the following parameter settings: -q 25 --phred33 --length 35 -e 0.1 --stringency. Trimmed files were then mapped to hg19 genome utilizing Bowtie2. Sambamba_v0.6.6 was conducted for the removal of duplicates. DeepTools-3.2.1 was then performed using the function of bamCoverage to generate normalized CPM.bw files.

    Analysis type

    De Novo Assembly

    OEZ009047

  • ATAC_CPM_Vehicle

    Fei Li, , 2022.05.25

    Description

    Raw sequencing data were first trimmed to remove adaptors and low-quality reads using TrimGalore-0.5.0 with the following parameter settings: -q 25 --phred33 --length 35 -e 0.1 --stringency. Trimmed files were then mapped to hg19 genome utilizing Bowtie2. Sambamba_v0.6.6 was conducted for the removal of duplicates. DeepTools-3.2.1 was then performed using the function of bamCoverage to generate normalized CPM.bw files.

    Analysis type

    De Novo Assembly

    OEZ009045

  • ATAC_narrowpeaks

    Fei Li, , 2022.05.25

    Description

    MACS2-2.1.1 was then utilized with -q 0.05 parameter setting for peak calling.

    Analysis type

    De Novo Assembly

    OEZ009044

  • RNA_count_matrix

    Fei Li, , 2022.05.25

    Description

    Low-quality sequences and adapters were removed by the function of trim_galore implanted in TrimGalore (version 0.5.0). Clean reads were further mapped to the GRCh38 genome using hisat2 (version 2.1.0). Gene expression was quantified at the gene level using featureCounts tool. Downstream analyses were performed in R (version 3.6.1).

    Analysis type

    De Novo Assembly

    OEZ009042

  • AMD_MAG_ling

    Ling Wang, Zhang-Guo qing Lab, CAS Key Laboratory of Computational Biology,Bio-Med Big Data Center, 2022.03.08

    Analysis type

    Sequence Annotation

    OEZ008530