General Information
- Experiment ID
- OEX000090
- Experiment Name
- xinchangpeng_NODEX00000063
- Experiment Type
- Transcriptomic
- Description
- We have optimized the metabolic tagging of newly transcribed RNAs by 4-thiouridine (4sU) to identify newly-transcribed (nascent) circRNAs from human PA1 cells, undifferentiated H9 cells and H9 differentiated FB neurons.
- Protocol
- Ribo? 4sUDRB-seq for characterizing nascent circRNA biogenesis.
- Used ID
- NODEX00000063  
Experiment information
- Attributes
-
library_layout Paired library_selection RANDOM library_strategy RNA-seq platform Illumina HiSeq 2500 - Project
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1
Project ID Project name Create Date OEP000083 4sUDRB-seq of human PA1 cells, undifferentiated H9 cells and H9 differentiated FB neurons. 2016-09-14 - Samples
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50
Sample ID Sample Name Organism Tissue Create Date OES002220 PA1 steady-state ribo– RNA replicate 1 Homo sapiens PA1 cells 2016-09-14 OES002221 PA1 steady-state ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-14 OES002222 PA1 nascent 0min ribo– RNA Homo sapiens PA1 cells 2016-09-26 OES002256 FB nascent 0min ribo– RNA Homo sapiens Embryonic stem cells 2016-09-27 OES002257 FB nascent 10min ribo– RNA Homo sapiens Embryonic stem cells 2016-09-27 OES002264 FB nascent 120min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002265 FB nascent 120min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002258 FB nascent 15min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002259 FB nascent 15min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002260 FB nascent 30min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002261 FB nascent 30min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002262 FB nascent 60min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002263 FB nascent 60min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002255 FB steady-state ribo– RNA Homo sapiens Embryonic stem cells 2016-09-27 OES002244 H9 nascent 0min ribo– RNA Homo sapiens Embryonic stem cells 2016-09-27 OES002245 H9 nascent 10min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002246 H9 nascent 10min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002253 H9 nascent 120min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002254 H9 nascent 120min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002247 H9 nascent 15min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002248 H9 nascent 15min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002249 H9 nascent 30min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002250 H9 nascent 30min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002251 H9 nascent 60min ribo– RNA replicate 1 Homo sapiens Embryonic stem cells 2016-09-27 OES002252 H9 nascent 60min ribo– RNA replicate 2 Homo sapiens Embryonic stem cells 2016-09-27 OES002243 H9 steady-state ribo– RNA Homo sapiens Embryonic stem cells 2016-09-27 OES002268 PA1 4sU 16 hr ribo– RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002269 PA1 4sU 16 hr ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002266 PA1 4sU 4 hr ribo– RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002267 PA1 4sU 4 hr ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002223 PA1 nascent 10min ribo– RNA Homo sapiens PA1 cells 2016-09-27 OES002231 PA1 nascent 120 min ribo– RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002232 PA1 nascent 120 min ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002233 PA1 nascent 120 min ribo– RNA replicate 3 Homo sapiens PA1 cells 2016-09-27 OES002224 PA1 nascent 15min ribo– RNA replicate1 Homo sapiens PA1 cells 2016-09-27 OES002225 PA1 nascent 15min ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002226 PA1 nascent 30 min ribo– RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002227 PA1 nascent 30 min ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002228 PA1 nascent 60 min ribo– RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002229 PA1 nascent 60 min ribo– RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002230 PA1 nascent 60 min ribo– RNA replicate 3 Homo sapiens PA1 cells 2016-09-27 OES002240 PA1 nascent 120min ribo–/RNase R RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002241 PA1 nascent 120min ribo–/RNase R RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002242 PA1 nascent 120min ribo–/RNase R RNA replicate 3 Homo sapiens PA1 cells 2016-09-27 OES002234 PA1 nascent 30min ribo–/RNase R RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002235 PA1 nascent 30min ribo–/RNase R RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 OES002236 PA1 nascent 30min ribo–/RNase R RNA replicate 3 Homo sapiens PA1 cells 2016-09-27 OES002237 PA1 nascent 30min ribo–/RNase R RNA replicate 4 Homo sapiens PA1 cells 2016-09-27 OES002238 PA1 nascent 60min ribo–/RNase R RNA replicate 1 Homo sapiens PA1 cells 2016-09-27 OES002239 PA1 nascent 60min ribo–/RNase R RNA replicate 2 Homo sapiens PA1 cells 2016-09-27 - Runs
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50
Run ID Run Name Sample Data Num Create Date OER008980 xinchangpeng_NODER00000601 PA1 steady-state ribo– RNA replicate 1 1 2016-09-26 OER008981 xinchangpeng_NODER00000602 PA1 steady-state ribo– RNA replicate 2 1 2016-09-26 OER008982 xinchangpeng_NODER00000603 PA1 nascent 0min ribo– RNA 1 2016-09-26 OER008983 xinchangpeng_NODER00000604 FB nascent 0min ribo– RNA 1 2016-09-26 OER008984 xinchangpeng_NODER00000605 FB nascent 10min ribo– RNA 1 2016-09-26 OER008985 xinchangpeng_NODER00000606 FB nascent 120min ribo– RNA replicate 1 1 2016-09-26 OER008986 xinchangpeng_NODER00000607 FB nascent 120min ribo– RNA replicate 2 1 2016-09-26 OER008987 xinchangpeng_NODER00000608 FB nascent 15min ribo– RNA replicate 1 1 2016-09-26 OER008988 xinchangpeng_NODER00000609 FB nascent 15min ribo– RNA replicate 2 1 2016-09-26 OER008989 xinchangpeng_NODER00000610 FB nascent 30min ribo– RNA replicate 1 1 2016-09-26 OER008990 xinchangpeng_NODER00000611 FB nascent 30min ribo– RNA replicate 2 1 2016-09-26 OER008991 xinchangpeng_NODER00000612 FB nascent 60min ribo– RNA replicate 1 1 2016-09-26 OER008992 xinchangpeng_NODER00000613 FB nascent 60min ribo– RNA replicate 2 1 2016-09-26 OER008993 xinchangpeng_NODER00000614 FB steady-state ribo– RNA 1 2016-09-26 OER008994 xinchangpeng_NODER00000615 H9 nascent 0min ribo– RNA 1 2016-09-26 OER008995 xinchangpeng_NODER00000616 H9 nascent 10min ribo– RNA replicate 1 1 2016-09-26 OER008996 xinchangpeng_NODER00000617 H9 nascent 10min ribo– RNA replicate 2 1 2016-09-26 OER008997 xinchangpeng_NODER00000618 H9 nascent 120min ribo– RNA replicate 1 1 2016-09-26 OER008998 xinchangpeng_NODER00000619 H9 nascent 120min ribo– RNA replicate 2 1 2016-09-26 OER008999 xinchangpeng_NODER00000620 H9 nascent 15min ribo– RNA replicate 1 1 2016-09-26 OER009000 xinchangpeng_NODER00000621 H9 nascent 15min ribo– RNA replicate 2 1 2016-09-26 OER009001 xinchangpeng_NODER00000622 H9 nascent 30min ribo– RNA replicate 1 1 2016-09-26 OER009002 xinchangpeng_NODER00000623 H9 nascent 30min ribo– RNA replicate 2 1 2016-09-26 OER009003 xinchangpeng_NODER00000624 H9 nascent 60min ribo– RNA replicate 1 1 2016-09-26 OER009004 xinchangpeng_NODER00000625 H9 nascent 60min ribo– RNA replicate 2 1 2016-09-26 OER009005 xinchangpeng_NODER00000626 H9 steady-state ribo– RNA 1 2016-09-26 OER009006 xinchangpeng_NODER00000627 PA1 4sU 16 hr ribo– RNA replicate 1 1 2016-09-26 OER009007 xinchangpeng_NODER00000628 PA1 4sU 16 hr ribo– RNA replicate 2 1 2016-09-26 OER009008 xinchangpeng_NODER00000629 PA1 4sU 4 hr ribo– RNA replicate 1 1 2016-09-26 OER009009 xinchangpeng_NODER00000630 PA1 4sU 4 hr ribo– RNA replicate 2 1 2016-09-26 OER009010 xinchangpeng_NODER00000631 PA1 nascent 10min ribo– RNA 1 2016-09-26 OER009011 xinchangpeng_NODER00000632 PA1 nascent 120 min ribo– RNA replicate 1 1 2016-09-26 OER009012 xinchangpeng_NODER00000633 PA1 nascent 120 min ribo– RNA replicate 2 1 2016-09-26 OER009013 xinchangpeng_NODER00000634 PA1 nascent 120 min ribo– RNA replicate 3 1 2016-09-26 OER009014 xinchangpeng_NODER00000635 PA1 nascent 15min ribo– RNA replicate1 1 2016-09-26 OER009015 xinchangpeng_NODER00000636 PA1 nascent 15min ribo– RNA replicate 2 1 2016-09-26 OER009016 xinchangpeng_NODER00000637 PA1 nascent 30 min ribo– RNA replicate 1 1 2016-09-26 OER009017 xinchangpeng_NODER00000638 PA1 nascent 30 min ribo– RNA replicate 2 1 2016-09-26 OER009018 xinchangpeng_NODER00000639 PA1 nascent 60 min ribo– RNA replicate 1 1 2016-09-26 OER009019 xinchangpeng_NODER00000640 PA1 nascent 60 min ribo– RNA replicate 2 1 2016-09-26 OER009020 xinchangpeng_NODER00000641 PA1 nascent 60 min ribo– RNA replicate 3 1 2016-09-26 OER009021 xinchangpeng_NODER00000642 PA1 nascent 120min ribo–/RNase R RNA replicate 1 1 2016-09-26 OER009022 xinchangpeng_NODER00000643 PA1 nascent 120min ribo–/RNase R RNA replicate 2 1 2016-09-26 OER009023 xinchangpeng_NODER00000644 PA1 nascent 120min ribo–/RNase R RNA replicate 3 1 2016-09-26 OER009024 xinchangpeng_NODER00000645 PA1 nascent 30min ribo–/RNase R RNA replicate 1 1 2016-09-26 OER009025 xinchangpeng_NODER00000646 PA1 nascent 30min ribo–/RNase R RNA replicate 2 1 2016-09-26 OER009026 xinchangpeng_NODER00000647 PA1 nascent 30min ribo–/RNase R RNA replicate 3 1 2016-09-26 OER009027 xinchangpeng_NODER00000648 PA1 nascent 30min ribo–/RNase R RNA replicate 4 1 2016-09-26 OER009028 xinchangpeng_NODER00000649 PA1 nascent 60min ribo–/RNase R RNA replicate 1 1 2016-09-26 OER009029 xinchangpeng_NODER00000650 PA1 nascent 60min ribo–/RNase R RNA replicate 2 1 2016-09-26
Author Information
- Create Date
- 2016-09-14
- Last Modified
- 2020-04-10
- Submission
- Changpeng Xin
- PICB