General Information
- Experiment ID
- OEX010852
- Experiment Name
- Metagenomic of hydrothermal vent in Kueishantao Islet
- Experiment Type
- Metagenomic
- Description
- Metagenomic sequenceing of vent fluid in a shallowwater hydrothermal field (Kueishantao Islet, NE Taiwan). The samples were collected in 2017, 2018 and 2019. The water was prefiltered through 3 um pore-size polycarbonate membranes and then collected in 0.22 um filter.
- Protocol
- Followed the standard protocal for metagenomic sequenceing
Experiment information
- Attributes
-
library_layout Paired mate_pair n/a insertion_size n/a number_of_reads_sequenced n/a library_name n/a library_selection size fractionation library_strategy WGS platform Illumina NovaSeq 6000 - Project
-
1
Project ID Project name Create Date OEP001339 Metagenome and metaproteome of bacteria in a shallowwater hydrothermal field (Kueishantao Islet, NE Taiwan) 2020-12-01 - Samples
-
7
Sample ID Sample Name Organism Tissue Create Date OES055246 GS_metagenomic_2018HQ hydrothermal vent metagenome N/A 2020-12-02 OES055247 GS_metagenomic_2019_HQ hydrothermal vent metagenome N/A 2020-12-02 OES055249 GS_metagenomic_2017HQ hydrothermal vent metagenome N/A 2020-12-02 OES055250 GS_metagenomic_2017BQ hydrothermal vent metagenome N/A 2020-12-02 OES055251 GS_metagenomic_2018BQ hydrothermal vent metagenome N/A 2020-12-02 OES055248 GS_metagenomic_2019BQ hydrothermal vent metagenome N/A 2020-12-02 OES055244 GS_metaproteomic_2018_HQ uncultured vent bacterium N/A 2020-12-02 - Runs
-
14
Run ID Run Name Sample Data Num Create Date OER090179 GS_metagenomic_2018HQ GS_metagenomic_2018HQ 2 2020-12-02 OER090180 metagenomic_2019_HQ GS_metagenomic_2019_HQ 2 2020-12-02 OER090181 2017_metageomic_HQ GS_metagenomic_2017HQ 12 2020-12-02 OER090182 2017_metageomic_BQ_run1 GS_metagenomic_2017BQ 0 2020-12-02 OER090184 2018_metagenomic_BQ GS_metagenomic_2018BQ 2 2020-12-02 OER090185 2019_metageomic_BQ GS_metagenomic_2019BQ 2 2020-12-02 OER103404 2017_metageomic_BQ_run2 GS_metagenomic_2017BQ 0 2021-02-02 OER103520 2017_metageomic_BQ_run GS_metagenomic_2017BQ 6 2021-02-02 OER182834 2017_metageomic_HQ_assembly GS_metagenomic_2017HQ 6 2021-05-11 OER182835 2017_metageomic_BQ_assembly GS_metagenomic_2017BQ 2 2021-05-11 OER182836 2018_metagenomic_HQ_assembly GS_metaproteomic_2018_HQ 1 2021-05-11 OER182837 2018_metagenomic_BQ_assembly GS_metagenomic_2018BQ 1 2021-05-11 OER182838 2019_metageomic_HQ_assembly GS_metagenomic_2019_HQ 1 2021-05-11 OER182839 2019_metageomic_BQ_assembly GS_metagenomic_2019BQ 1 2021-05-11 - Analysis
-
15
Analysis ID Analysis Title Analysis Type Data Num Create Date OEZ007574 2019_Bins Sequence Annotation 0 2021-05-16 OEZ007575 2018_Bins Sequence Annotation 0 2021-05-16 OEZ007576 2017_Bins Sequence Annotation 0 2021-05-16 OEZ007577 2019_bins_assembly De Novo Assembly 0 2021-05-16 OEZ007580 2019_BQN_ORF De Novo Assembly 0 2021-05-16 OEZ007581 2019_HQN_ORF De Novo Assembly 0 2021-05-16 OEZ007582 2018_BQN_ORF De Novo Assembly 0 2021-05-16 OEZ007583 2018_HQN_ORF De Novo Assembly 0 2021-05-16 OEZ007584 2017_BQN_ORF De Novo Assembly 0 2021-05-16 OEZ007585 2017_HQN_ORF De Novo Assembly 0 2021-05-16 OEZ007586 2019_BQN_metagenome_taxonomy Sequence Annotation 0 2021-05-16 OEZ007588 2018_BQN_metagenome_taxonomy Sequence Annotation 0 2021-05-16 OEZ007589 2018 HQN_metageome_taxonomy Sequence Annotation 0 2021-05-16 OEZ007590 2017_BQN_metagenome_taxonomy Sequence Annotation 0 2021-05-16 OEZ007591 2017_HQN_metagenome_taxonomy Sequence Annotation 0 2021-05-16
Author Information
- Create Date
- 2020-12-01
- Last Modified
- 2023-03-13
- Submission
- Xiaofeng Chen
- State Key Laboratory of Marine Environmental Science