General Information
- Experiment ID
- OEX011788
- Experiment Name
- CRC_genomic DNA extraction
- Experiment Type
- Metagenomic
- Description
- genome DNA extracted from fecal sample from CRC patient
- Protocol
- WGS of DNA extracted from fecal samples of CRC patients.
Experiment information
- Attributes
-
library_layout Paired mate_pair n/a insertion_size n/a number_of_reads_sequenced n/a library_name n/a library_selection RANDOM library_strategy WGS platform Illumina NovaSeq 6000 - Project
-
1
Project ID Project name Create Date OEP001340 Multi-kingdom microbiota analyses identify bacterial-fungal interactions and biomarkers of colorectal cancer across cohorts 2020-12-02 - Samples
-
80
Sample ID Sample Name Organism Tissue Create Date OES065684 CRC_1 (1_FDSW202414413-1b) human gut metagenome feces 2021-01-15 OES065685 CRC_2 (2_FDME20H101911-2r) human gut metagenome feces 2021-01-15 OES065686 CRC_3 (3_FDSW202414415-1r) human gut metagenome feces 2021-01-15 OES065687 CRC_4 (4_FDSW202414416-1r) human gut metagenome feces 2021-01-15 OES065688 CRC_5 (5_FDSW202414417-1b) human gut metagenome feces 2021-01-15 OES065689 CRC_6 (6_FDSW202414418-1r) human gut metagenome feces 2021-01-15 OES065690 CRC_7 (7_FDSW202414419-1r) human gut metagenome feces 2021-01-15 OES065691 CRC_8 (8_FDSW202414420-1b) human gut metagenome feces 2021-01-15 OES065692 CRC_9 (9_FDSW202414421-1r) human gut metagenome feces 2021-01-15 OES065693 CRC_10 (10_FDSW202414422-1r) human gut metagenome feces 2021-01-15 OES065694 CRC_11 (11_FDSW202414423-1b) human gut metagenome feces 2021-01-15 OES065695 CRC_12 (12_FDSW202414424-1r) human gut metagenome feces 2021-01-15 OES065696 CRC_13 (13_FDSW202414425-1r) human gut metagenome feces 2021-01-15 OES065697 CRC_14 (14_FDSW202414426-1r) human gut metagenome feces 2021-01-15 OES065698 CRC_16 (16_FDSW202414428-1r) human gut metagenome feces 2021-01-15 OES065699 CRC_17 (17_FDSW202414429-1r) human gut metagenome feces 2021-01-15 OES065700 CRC_18 (18_FDSW202414430-1r) human gut metagenome feces 2021-01-15 OES065701 CRC_19 (19_FDSW202414431-1b) human gut metagenome feces 2021-01-15 OES065702 CRC_20 (20_FDSW202414432-1r) human gut metagenome feces 2021-01-15 OES065703 CRC_21 (21_FDSW202414433-1r) human gut metagenome feces 2021-01-15 OES065704 CRC_22 (22_FDSW202414434-1r) human gut metagenome feces 2021-01-15 OES065705 CRC_23 (23_FDSW202414435-1r) human gut metagenome feces 2021-01-15 OES065706 CRC_24 (24_FDSW202414436-1r) human gut metagenome feces 2021-01-15 OES065707 CRC_25 (25_FDSW202414437-1r) human gut metagenome feces 2021-01-15 OES065708 CRC_26 (26_FDSW202414438-1r) human gut metagenome feces 2021-01-15 OES065709 CRC_27 (27_FDSW202414439-1r) human gut metagenome feces 2021-01-15 OES065710 CRC_28 (28_FDSW202414440-1r) human gut metagenome feces 2021-01-15 OES065711 CRC_29 (29_FDSW202414441-1b) human gut metagenome feces 2021-01-15 OES065712 CRC_30 (30_FDSW202414442-1r) human gut metagenome feces 2021-01-15 OES065713 CRC_32 (32_FDSW202414444-1b) human gut metagenome feces 2021-01-15 OES065714 CRC_33 (33_FDSW202414445-1r) human gut metagenome feces 2021-01-15 OES065715 CRC_34 (34_FDSW202414446-1r) human gut metagenome feces 2021-01-15 OES065716 CRC_35 (35_FDSW202414447-1r) human gut metagenome feces 2021-01-15 OES065717 CRC_36 (36_FDSW202414448-1r) human gut metagenome feces 2021-01-15 OES065718 CRC_37 (37_FDSW202414449-1r) human gut metagenome feces 2021-01-15 OES065719 CRC_38 (38_FDSW202414450-1b) human gut metagenome feces 2021-01-15 OES065720 CRC_39 (39_FDSW202414451-1r) human gut metagenome feces 2021-01-15 OES065721 CRC_40 (40_FDSW202414452-1r) human gut metagenome feces 2021-01-15 OES065722 CRC_41 (41_FDME20H101912-2r) human gut metagenome feces 2021-01-15 OES065723 CRC_42 (42_FDSW202414454-1r) human gut metagenome feces 2021-01-15 OES065724 CRC_43 (43_FDSW202414455-1b) human gut metagenome feces 2021-01-15 OES065725 CRC_44 (44_FDSW202414456-1r) human gut metagenome feces 2021-01-15 OES065726 CRC_45 (45_FDSW202414457-1b) human gut metagenome feces 2021-01-15 OES065727 CRC_47 (47_FDSW202414459-1r) human gut metagenome feces 2021-01-15 OES065729 CRC_49 (48_FDSW202414460-1r) human gut metagenome feces 2021-01-15 OES065730 CRC_50 (49_FDSW202414461-1r) human gut metagenome feces 2021-01-15 OES065731 CRC_51 (50_FDSW202414462-1r) human gut metagenome feces 2021-01-15 OES065732 CRC_52 (51_FDSW202414463-1r) human gut metagenome feces 2021-01-15 OES065733 CRC_53 (52_FDSW202414464-1r) human gut metagenome feces 2021-01-15 OES065734 CRC_54 (53_FDSW202414465-1r) human gut metagenome feces 2021-01-15 OES065735 CRC_55 (54_FDSW202414466-1r) human gut metagenome feces 2021-01-15 OES065736 CRC_56 (55_FDSW202414467-1r) human gut metagenome feces 2021-01-15 OES065737 CRC_57 (56_FDSW202414468-1r) human gut metagenome feces 2021-01-15 OES065739 CRC_61 (61_FDSW202442335-1r) human gut metagenome feces 2021-01-15 OES065740 CRC_62 (62_FDSW202414474-1r) human gut metagenome feces 2021-01-15 OES065741 CRC_63 (63_FDME20H101915-2r) human gut metagenome feces 2021-01-15 OES065742 CRC_64 (64_FDSW202414476-1r) human gut metagenome feces 2021-01-15 OES065743 CRC_66 (66_FDME20H101916-2r) human gut metagenome feces 2021-01-15 OES065744 CRC_67 (67_FDSW202414479-1r) human gut metagenome feces 2021-01-15 OES065745 CRC_68 (68_FDSW202414480-1r) human gut metagenome feces 2021-01-15 OES065747 CRC_70 (69_FDSW202414481-1r) human gut metagenome feces 2021-01-15 OES065748 CRC_71 (70_FDSW202414482-1r) human gut metagenome feces 2021-01-15 OES065749 CRC_72 (71_FDSW202414483-1r) human gut metagenome feces 2021-01-15 OES065750 CRC_73 (72_FDSW202414484-1r) human gut metagenome feces 2021-01-15 OES065751 CRC_74 (73_FDME20H101917-1r) human gut metagenome feces 2021-01-15 OES065752 CRC_75 (74_FDME20H101918-1r) human gut metagenome feces 2021-01-15 OES065753 CRC_76 (75_FDME202475862-1a) human gut metagenome feces 2021-01-15 OES065754 CRC_77 (76_FDSW202414488-1r) human gut metagenome feces 2021-01-15 OES065755 CRC_78 (77_FDME20H101919-1r) human gut metagenome feces 2021-01-15 OES065757 CRC_81 (80_FDSW202414492-1r) human gut metagenome feces 2021-01-15 OES065758 CRC_82 (81_FDME202475866-2a) human gut metagenome feces 2021-01-15 OES065759 CRC_83 (82_FDSW202414494-1r) human gut metagenome feces 2021-01-15 OES065760 CRC_84 (83_FDSW202442343-1r) human gut metagenome feces 2021-01-15 OES065761 CRC_85 (84_FDME20H101921-1r) human gut metagenome feces 2021-01-15 OES065762 CRC_86 (85_FDSW202414497-1r) human gut metagenome feces 2021-01-15 OES065763 CRC_87 (86_FDSW202414498-1r) human gut metagenome feces 2021-01-15 OES325460 CRC_187(87_FDSW202414499-1r) Homo sapiens feces 2023-10-13 OES325457 CRC_157(57_FDME20H101913-2r) Homo sapiens feces 2023-10-13 OES325458 CRC_159(59_FDME20H101914-2r) Homo sapiens feces 2023-10-13 OES325459 CRC_178(78_FDSW202414490-1r) Homo sapiens feces 2023-10-13 - Runs
-
80
Run ID Run Name Sample Data Num Create Date OER100118 CRC_1-WGS CRC_1 (1_FDSW202414413-1b) 2 2021-01-15 OER100119 CRC_2-WGS CRC_2 (2_FDME20H101911-2r) 2 2021-01-15 OER100120 CRC_3-WGS CRC_3 (3_FDSW202414415-1r) 2 2021-01-15 OER100121 CRC_4-WGS CRC_4 (4_FDSW202414416-1r) 2 2021-01-15 OER100122 CRC_5-WGS CRC_5 (5_FDSW202414417-1b) 2 2021-01-15 OER100123 CRC_6-WGS CRC_6 (6_FDSW202414418-1r) 2 2021-01-15 OER100124 CRC_7-WGS CRC_7 (7_FDSW202414419-1r) 2 2021-01-15 OER100125 CRC_8-WGS CRC_8 (8_FDSW202414420-1b) 2 2021-01-15 OER100126 CRC_9-WGS CRC_9 (9_FDSW202414421-1r) 2 2021-01-15 OER100127 CRC_10-WGS CRC_10 (10_FDSW202414422-1r) 2 2021-01-15 OER100128 CRC_11-WGS CRC_11 (11_FDSW202414423-1b) 2 2021-01-15 OER100129 CRC_12-WGS CRC_12 (12_FDSW202414424-1r) 2 2021-01-15 OER100130 CRC_13-WGS CRC_13 (13_FDSW202414425-1r) 2 2021-01-15 OER100131 CRC_14-WGS CRC_14 (14_FDSW202414426-1r) 2 2021-01-15 OER100132 CRC_16-WGS CRC_16 (16_FDSW202414428-1r) 2 2021-01-15 OER100133 CRC_17-WGS CRC_17 (17_FDSW202414429-1r) 2 2021-01-15 OER100134 CRC_18-WGS CRC_18 (18_FDSW202414430-1r) 2 2021-01-15 OER100135 CRC_19-WGS CRC_19 (19_FDSW202414431-1b) 2 2021-01-15 OER100136 CRC_20-WGS CRC_20 (20_FDSW202414432-1r) 2 2021-01-15 OER100137 CRC_21-WGS CRC_21 (21_FDSW202414433-1r) 2 2021-01-15 OER100138 CRC_22-WGS CRC_22 (22_FDSW202414434-1r) 2 2021-01-15 OER100139 CRC_23-WGS CRC_23 (23_FDSW202414435-1r) 2 2021-01-15 OER100140 CRC_24-WGS CRC_24 (24_FDSW202414436-1r) 2 2021-01-15 OER100141 CRC_25-WGS CRC_25 (25_FDSW202414437-1r) 2 2021-01-15 OER100142 CRC_26-WGS CRC_26 (26_FDSW202414438-1r) 2 2021-01-15 OER100143 CRC_27-WGS CRC_27 (27_FDSW202414439-1r) 2 2021-01-15 OER100144 CRC_28-WGS CRC_28 (28_FDSW202414440-1r) 2 2021-01-15 OER100145 CRC_29-WGS CRC_29 (29_FDSW202414441-1b) 2 2021-01-15 OER100146 CRC_30-WGS CRC_30 (30_FDSW202414442-1r) 2 2021-01-15 OER100147 CRC_32-WGS CRC_32 (32_FDSW202414444-1b) 2 2021-01-15 OER100148 CRC_33-WGS CRC_33 (33_FDSW202414445-1r) 2 2021-01-15 OER100149 CRC_34-WGS CRC_34 (34_FDSW202414446-1r) 2 2021-01-15 OER100150 CRC_35-WGS CRC_35 (35_FDSW202414447-1r) 2 2021-01-15 OER100151 CRC_36-WGS CRC_36 (36_FDSW202414448-1r) 2 2021-01-15 OER100152 CRC_37-WGS CRC_37 (37_FDSW202414449-1r) 2 2021-01-15 OER100153 CRC_38-WGS CRC_38 (38_FDSW202414450-1b) 2 2021-01-15 OER100154 CRC_39-WGS CRC_39 (39_FDSW202414451-1r) 2 2021-01-15 OER100155 CRC_40-WGS CRC_40 (40_FDSW202414452-1r) 2 2021-01-15 OER100156 CRC_41-WGS CRC_41 (41_FDME20H101912-2r) 2 2021-01-15 OER100157 CRC_42-WGS CRC_42 (42_FDSW202414454-1r) 2 2021-01-15 OER100158 CRC_43-WGS CRC_43 (43_FDSW202414455-1b) 2 2021-01-15 OER100159 CRC_44-WGS CRC_44 (44_FDSW202414456-1r) 2 2021-01-15 OER100160 CRC_45-WGS CRC_45 (45_FDSW202414457-1b) 2 2021-01-15 OER100161 CRC_47-WGS CRC_47 (47_FDSW202414459-1r) 2 2021-01-15 OER100163 CRC_49-WGS CRC_49 (48_FDSW202414460-1r) 2 2021-01-15 OER100164 CRC_50-WGS CRC_50 (49_FDSW202414461-1r) 2 2021-01-15 OER100165 CRC_51-WGS CRC_51 (50_FDSW202414462-1r) 2 2021-01-15 OER100166 CRC_52-WGS CRC_52 (51_FDSW202414463-1r) 2 2021-01-15 OER100167 CRC_53-WGS CRC_53 (52_FDSW202414464-1r) 2 2021-01-15 OER100168 CRC_54-WGS CRC_54 (53_FDSW202414465-1r) 2 2021-01-15 OER100169 CRC_55-WGS CRC_55 (54_FDSW202414466-1r) 2 2021-01-15 OER100170 CRC_56-WGS CRC_56 (55_FDSW202414467-1r) 2 2021-01-15 OER100171 CRC_57-WGS CRC_57 (56_FDSW202414468-1r) 2 2021-01-15 OER100173 CRC_61-WGS CRC_61 (61_FDSW202442335-1r) 2 2021-01-15 OER100174 CRC_62-WGS CRC_62 (62_FDSW202414474-1r) 2 2021-01-15 OER100175 CRC_63-WGS CRC_63 (63_FDME20H101915-2r) 2 2021-01-15 OER100176 CRC_64-WGS CRC_64 (64_FDSW202414476-1r) 2 2021-01-15 OER100177 CRC_66-WGS CRC_66 (66_FDME20H101916-2r) 2 2021-01-15 OER100178 CRC_67-WGS CRC_67 (67_FDSW202414479-1r) 2 2021-01-15 OER100179 CRC_68-WGS CRC_68 (68_FDSW202414480-1r) 2 2021-01-15 OER100181 CRC_70-WGS CRC_70 (69_FDSW202414481-1r) 2 2021-01-15 OER100182 CRC_71-WGS CRC_71 (70_FDSW202414482-1r) 2 2021-01-15 OER100183 CRC_72-WGS CRC_72 (71_FDSW202414483-1r) 2 2021-01-15 OER100184 CRC_73-WGS CRC_73 (72_FDSW202414484-1r) 2 2021-01-15 OER100185 CRC_74-WGS CRC_74 (73_FDME20H101917-1r) 2 2021-01-15 OER100186 CRC_75-WGS CRC_75 (74_FDME20H101918-1r) 2 2021-01-15 OER100187 CRC_76-WGS CRC_76 (75_FDME202475862-1a) 2 2021-01-15 OER100188 CRC_77-WGS CRC_77 (76_FDSW202414488-1r) 2 2021-01-15 OER100189 CRC_78-WGS CRC_78 (77_FDME20H101919-1r) 2 2021-01-15 OER100191 CRC_81-WGS CRC_81 (80_FDSW202414492-1r) 2 2021-01-15 OER100192 CRC_82-WGS CRC_82 (81_FDME202475866-2a) 2 2021-01-15 OER100193 CRC_83-WGS CRC_83 (82_FDSW202414494-1r) 2 2021-01-15 OER100194 CRC_84-WGS CRC_84 (83_FDSW202442343-1r) 2 2021-01-15 OER100195 CRC_85-WGS CRC_85 (84_FDME20H101921-1r) 2 2021-01-15 OER100196 CRC_86-WGS CRC_86 (85_FDSW202414497-1r) 2 2021-01-15 OER100197 CRC_87-WGS CRC_87 (86_FDSW202414498-1r) 2 2021-01-15 OER431237 OER_Ningning_2310131047 CRC_187(87_FDSW202414499-1r) 2 2023-10-13 OER431240 OER_Ningning_2310131050 CRC_157(57_FDME20H101913-2r) 2 2023-10-13 OER431241 OER_Ningning_2310131051 CRC_159(59_FDME20H101914-2r) 2 2023-10-13 OER431242 OER_Ningning_2310131052 CRC_178(78_FDSW202414490-1r) 2 2023-10-13
Author Information
- Create Date
- 2021-01-15
- Last Modified
- 2024-05-29
- Submission
- Ningning Liu
- Shanghai Jiao Tong University