General Information
- Experiment ID
- OEX025249
- Experiment Name
- LC-MS based untargeted metabolome analysis of plants
- Experiment Type
- Metabolomic
- Description
- Compounds in various samples of plants were analyzed using liquid chromatography-mass spectrometry (LC-MS).
- Protocol
- The freeze-dried tissues were ground using a tissue grinder for 2 min at 55 Hz. 150 mg of powder was weighed and mixed with 1.5 ml 70% aqueous methanol (containing 1 mg/L capsaicin as the internal standard). The samples were vortexed every 10 min for 3 times and extracted overnight at 4 °C. Following centrifugation at 12000 g for 15 min, all the supernatants were filtered using a 0.22 μm filter and transferred to a liquid phase bottle for subsequent analysis. Samples were analyzed on a Waters Acquity Ultra Performance Liquid Chromatography system equipped with an ACQUITY UPLC BEH C18 column (1.7 μm, 2.1 mm × 100 mm) coupled with Q Exactive hybrid Q-Orbitrap-high resolution mass spectrometry (Q-Orbitrap-HRMS) (Thermo Fisher Scientific).
Experiment information
- Attributes
-
experimental_method HRMS retention_time (m/z) 100-1000 ion_mode Both instrument_type ESI-TRAP platform Q Exactive - Project
-
1
Project ID Project name Create Date OEP004638 RefMetaPlant: a reference metabolome database for plants across five major phyla 2023-10-12 - Samples
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153
Sample ID Sample Name Organism Tissue Create Date OES324331 acacia Vachellia farnesiana leaf 2023-10-12 OES324184 acer Acer truncatum leaf 2023-10-12 OES324185 achyranthes Achyranthes aspera leaf 2023-10-12 OES324186 aconitum Aconitum carmichaelii leaf 2023-10-12 OES324188 adiantum Adiantum capillus-veneris leaf 2023-10-12 OES324189 albizia Albizia julibrissin leaf 2023-10-12 OES324190 allium Allium macrostemon leaf 2023-10-12 OES324191 alsophila Alsophila spinulosa leaf 2023-10-12 OES324192 amorpha Amorpha fruticosa leaf 2023-10-12 OES324193 arabidopsis Arabidopsis thaliana root,stem,leaf 2023-10-12 OES324194 ardisia Ardisia japonica root,stem,leaf 2023-10-12 OES324195 aristolochia Aristolochia tubiflora leaf 2023-10-12 OES324197 arundina Arundina graminifolia leaf 2023-10-12 OES324198 asparagus Asparagus filicinus leaf,root 2023-10-12 OES324199 astragalus Astragalus membranaceus root,stem,leaf 2023-10-12 OES324288 bamboo Phyllostachys edulis leaf 2023-10-12 OES324200 bassia Bassia scoparia leaf 2023-10-12 OES324201 begonia Begonia cucullata leaf 2023-10-12 OES324202 bergenia Bergenia purpurascens leaf 2023-10-12 OES324203 biancaea Biancaea decapetala leaf 2023-10-12 OES324204 bletilla Bletilla striata leaf 2023-10-12 OES324205 boehmeria Boehmeria nivea leaf 2023-10-12 OES324206 bombax Bombax ceiba leaf 2023-10-12 OES324207 broussonetia Broussonetia papyrifera leaf 2023-10-12 OES324281 cactus Opuntia dillenii stem,leaf 2023-10-12 OES324208 calliandra Calliandra haematocephala leaf 2023-10-12 OES324209 callistemon Callistemon rigidus leaf,stem 2023-10-12 OES324210 calystegia Calystegia hederacea leaf 2023-10-12 OES324211 camellia Camellia sinensis leaf 2023-10-12 OES324212 canna Canna indica leaf 2023-10-12 OES324213 carica Carica papaya leaf 2023-10-12 OES324214 carya Carya illinoinensis leaf 2023-10-12 OES324266 cassava Manihot esculenta root 2023-10-12 OES324215 catalpa Catalpa ovata leaf 2023-10-12 OES324216 cayratia Causonis japonica leaf 2023-10-12 OES324217 cercis Cercis glabra leaf 2023-10-12 OES324218 cheniella Fabaceae leaf 2023-10-12 OES324219 chimonanthus Chimonanthus praecox leaf 2023-10-12 OES324220 cinnamomum Cinnamomum camphora leaf 2023-10-12 OES324221 citrus Citrus trifoliata leaf,fruit 2023-10-12 OES324222 clematis Clematis chinensis leaf,stem 2023-10-12 OES324223 coffee Coffea arabica leaf 2023-10-12 OES324224 coptis Coptis chinensis root,stem,leaf 2023-10-12 OES324225 coriandrum Coriandrum sativum leaf 2023-10-12 OES324228 cycas Cycas revoluta leaf 2023-10-12 OES324229 cyperus Cyperus rotundus leaf 2023-10-12 OES324326 dandelion Taraxacum mongolicum leaf 2023-10-12 OES324245 daylily Hemerocallis fulva leaf 2023-10-12 OES324232 dioscorea Dioscorea bulbifera leaf 2023-10-12 OES324230 d_assamica Dalbergia assamica leaf 2023-10-12 OES324231 d_odorifera Dalbergia odorifera leaf 2023-10-12 OES324234 erythrina Erythrina variegata leaf 2023-10-12 OES324235 euonymus Euonymus alatus leaf 2023-10-12 OES324236 eupatorium Eupatorium fortunei root,stem,leaf,flower 2023-10-12 OES324294 fallopia Fallopia multiflora leaf 2023-10-12 OES324237 fig Ficus carica leaf 2023-10-12 OES324238 forsythia Forsythia viridissima leaf 2023-10-12 OES324239 gardenia Gardenia jasminoides leaf 2023-10-12 OES324240 gigasiphon Gigasiphon macrosiphon leaf 2023-10-12 OES324241 ginkgo Ginkgo biloba leaf,root 2023-10-12 OES324242 gleditsia Gleditsia japonica var. velutina leaf 2023-10-12 OES324226 hawthorn Crataegus pinnatifida leaf 2023-10-12 OES324246 houpoea Magnolia officinalis leaf,stem 2023-10-12 OES324247 houttuynia Houttuynia cordata leaf,stem 2023-10-12 OES324248 hydrangea Hydrangea macrophylla leaf 2023-10-12 OES324249 hypericum Hypericum longistylum leaf 2023-10-12 OES324250 ilex Ilex latifolia leaf 2023-10-12 OES324251 illicium Illicium henryi leaf 2023-10-12 OES324252 indigofera Indigofera bungeana leaf,fruit 2023-10-12 OES324196 jackfruit Artocarpus heterophyllus leaf 2023-10-12 OES324336 jujube Ziziphus jujuba leaf,fruit 2023-10-12 OES324253 juncus Juncus setchuensis leaf 2023-10-12 OES324254 kadsura Kadsura longipedunculata leaf 2023-10-12 OES324187 kiwi_fruit Actinidia chinensis leaf 2023-10-12 OES324255 laurus Laurus nobilis leaf 2023-10-12 OES324334 zanthoxylum Zanthoxylum armatum leaf,fruit 2023-10-12 OES324333 wisteria Wisteria sinensis leaf 2023-10-12 OES324330 wheat Triticum aestivum seed 2023-10-12 OES324277 water_lily Nymphaea tetragona leaf 2023-10-12 OES324332 vernicia Vernicia fordii leaf 2023-10-12 OES324329 triadica Triadica sebifera leaf 2023-10-12 OES324328 toxicodendron Toxicodendron succedaneum leaf 2023-10-12 OES324327 taxus Taxus wallichiana leaf,stem,bark 2023-10-12 OES324325 tamarindus Tamarindus indica leaf 2023-10-12 OES324324 syzygium Syzygium hancei leaf 2023-10-12 OES324233 sweet_potato Dioscorea esculenta root 2023-10-12 OES324244 sunflower Helianthus annuus leaf 2023-10-12 OES324323 styphnolobium Styphnolobium japonicum leaf 2023-10-12 OES324322 stemona Stemona japonica root,leaf,fruit 2023-10-12 OES324321 stachyurus Stachyurus yunnanensis leaf,stem 2023-10-12 OES324320 speirantha Speirantha gardenii leaf,stem 2023-10-12 OES324243 soybean Glycine max seed 2023-10-12 OES324319 solidago Solidago canadensis leaf,flower 2023-10-12 OES324318 solanum Solanum nigrum leaf 2023-10-12 OES324315 smoe Selaginella moellendorffii root,stem,leaf 2023-10-12 OES324317 silybum Silybum marianum root,stem,leaf 2023-10-12 OES324316 sesbania Sesbania cannabina leaf,seed 2023-10-12 OES324314 sedum Sedum alfredii leaf 2023-10-12 OES324313 scutellaria Scutellaria barbata root,stem,leaf 2023-10-12 OES324312 schisandra Schisandra chinensis leaf,stem 2023-10-12 OES324311 saraca Saraca dives leaf 2023-10-12 OES324308 salix Salix chienii leaf 2023-10-12 OES324307 sagittaria Sagittaria trifolia root,stem,leaf,fruit 2023-10-12 OES324310 s_plebeia Salvia plebeia leaf 2023-10-12 OES324309 s_miltiorrhiza Salvia miltiorrhiza root,stem,leaf 2023-10-12 OES324306 rostellularia Justicia procumbens root,stem,leaf 2023-10-12 OES324305 rose Rosa multiflora leaf 2023-10-12 OES324304 robinia Robinia pseudoacacia leaf 2023-10-12 OES324283 rice Oryza sativa seed 2023-10-12 OES324303 rhynchosia Rhynchosia volubilis leaf 2023-10-12 OES324302 radish Raphanus sativus leaf 2023-10-12 OES324301 quercus Quercus aliena var. acutiserrata leaf 2023-10-12 OES324300 punica Punica granatum leaf 2023-10-12 OES324227 pumpkin Cucurbita moschata leaf,fruit 2023-10-12 OES324299 pterocarpus Pterocarpus macrocarpus leaf 2023-10-12 OES324296 portulaca Portulaca oleracea leaf,stem 2023-10-12 OES324287 polygonum Persicaria chinensis stem,leaf,flower 2023-10-12 OES324295 polygonatum Polygonatum cyrtonema leaf 2023-10-12 OES324293 platycodon Platycodon grandiflorus leaf,stem 2023-10-12 OES324292 pithecellobium Pithecellobium dulce leaf 2023-10-12 OES324291 pinellia Pinellia ternata root,stem,leaf 2023-10-12 OES324289 physcomitrium Physcomitrium whole plant 2023-10-12 OES324286 perilla Perilla frutescens leaf 2023-10-12 OES324297 peach Prunus persica leaf 2023-10-12 OES324285 passiflora Passiflora edulis leaf,fruit 2023-10-12 OES324298 p_spinosa Prunus spinosa leaf 2023-10-12 OES324290 p_pedatisecta Pinellia pedatisecta root,stem,leaf 2023-10-12 OES324284 osmanthus Osmanthus fragrans leaf,flower 2023-10-12 OES324282 ormosia Ormosia hosiei leaf 2023-10-12 OES324280 ophiopogon Ophiopogon bodinieri leaf 2023-10-12 OES324279 oenanthe Oenanthe javanica leaf 2023-10-12 OES324278 nyssa Nyssa sinensis leaf 2023-10-12 OES324276 nerium Nerium oleander leaf 2023-10-12 OES324275 nephrolepis Nephrolepis auriculata leaf 2023-10-12 OES324273 musa Musa balbisiana leaf 2023-10-12 OES324272 morus Morus alba leaf 2023-10-12 OES324271 morella Morella rubra leaf 2023-10-12 OES324270 michelia Magnolia maudiae leaf 2023-10-12 OES324269 melia Melia azedarach leaf 2023-10-12 OES324268 medicago Medicago sativa root,stem,leaf 2023-10-12 OES324267 marchantia Marchantia polymorpha whole plant 2023-10-12 OES324335 maize Zea mays seed 2023-10-12 OES324265 magnolia Magnolia grandiflora leaf 2023-10-12 OES324264 macadamia Macadamia ternifolia leaf 2023-10-12 OES324263 lygodium Lygodium japonicum leaf 2023-10-12 OES324262 lycium Lycium chinense leaf 2023-10-12 OES324274 lotus Nelumbo nucifera leaf 2023-10-12 OES324260 lonicera Lonicera japonica leaf 2023-10-12 OES324259 liriodendron Liriodendron chinense leaf 2023-10-12 OES324258 lindera Lindera megaphylla leaf 2023-10-12 OES324256 leonurus Leonurus japonicus root,stem,leaf 2023-10-12 OES324257 lespedeza Lespedeza thunbergii leaf 2023-10-12 OES324261 l_maackii Lonicera maackii leaf 2023-10-12 - Runs
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153
Run ID Run Name Sample Data Num Create Date OER430746 OER430577 acacia 1 2023-10-12 OER430747 OER430578 acer 1 2023-10-12 OER430748 OER430579 achyranthes 1 2023-10-12 OER430749 OER430580 aconitum 1 2023-10-12 OER430750 OER430581 adiantum 1 2023-10-12 OER430751 OER430582 albizia 1 2023-10-12 OER430752 OER430583 allium 1 2023-10-12 OER430753 OER430584 alsophila 1 2023-10-12 OER430754 OER430585 amorpha 1 2023-10-12 OER430755 OER430586 arabidopsis 1 2023-10-12 OER430756 OER430587 ardisia 1 2023-10-12 OER430757 OER430588 aristolochia 1 2023-10-12 OER430758 OER430589 arundina 1 2023-10-12 OER430759 OER430590 asparagus 1 2023-10-12 OER430760 OER430591 astragalus 1 2023-10-12 OER430761 OER430592 bamboo 1 2023-10-12 OER430762 OER430593 bassia 1 2023-10-12 OER430763 OER430594 begonia 1 2023-10-12 OER430764 OER430595 bergenia 1 2023-10-12 OER430765 OER430597 biancaea 1 2023-10-12 OER430766 OER430599 bletilla 1 2023-10-12 OER430767 OER430601 boehmeria 1 2023-10-12 OER430768 OER430603 bombax 1 2023-10-12 OER430769 OER430605 broussonetia 1 2023-10-12 OER430770 OER430610 cactus 1 2023-10-12 OER430771 OER430611 calliandra 1 2023-10-12 OER430772 OER430613 callistemon 1 2023-10-12 OER430773 OER430614 calystegia 1 2023-10-12 OER430774 OER430615 camellia 1 2023-10-12 OER430775 OER430617 canna 1 2023-10-12 OER430776 OER430618 carica 1 2023-10-12 OER430777 OER430620 carya 1 2023-10-12 OER430778 OER430621 cassava 1 2023-10-12 OER430779 OER430622 catalpa 1 2023-10-12 OER430780 OER430623 cayratia 1 2023-10-12 OER430781 OER430624 cercis 1 2023-10-12 OER430782 OER430625 cheniella 1 2023-10-12 OER430783 OER430626 chimonanthus 1 2023-10-12 OER430784 OER430627 cinnamomum 1 2023-10-12 OER430785 OER430628 citrus 1 2023-10-12 OER430786 OER430629 clematis 1 2023-10-12 OER430787 OER430630 coffee 1 2023-10-12 OER430788 OER430631 coptis 1 2023-10-12 OER430789 OER430632 coriandrum 1 2023-10-12 OER430790 OER430633 cycas 1 2023-10-12 OER430791 OER430634 cyperus 1 2023-10-12 OER430792 OER430717 dandelion 1 2023-10-12 OER430793 OER430719 daylily 1 2023-10-12 OER430794 OER430721 dioscorea 1 2023-10-12 OER430795 OER430722 d_assamica 1 2023-10-12 OER430796 OER430725 d_odorifera 1 2023-10-12 OER430797 OER430726 erythrina 1 2023-10-12 OER430798 OER430728 euonymus 1 2023-10-12 OER430799 OER430730 eupatorium 1 2023-10-12 OER430800 OER430731 fallopia 1 2023-10-12 OER430801 OER430734 fig 1 2023-10-12 OER430802 OER430735 forsythia 1 2023-10-12 OER430803 OER430737 gardenia 1 2023-10-12 OER430804 OER430739 gigasiphon 1 2023-10-12 OER430805 OER430741 ginkgo 1 2023-10-12 OER430806 OER430743 gleditsia 1 2023-10-12 OER430807 OER430745 hawthorn 1 2023-10-12 OER430808 OER430744 houpoea 1 2023-10-12 OER430809 OER430742 houttuynia 1 2023-10-12 OER430810 OER430740 hydrangea 1 2023-10-12 OER430811 OER430738 hypericum 1 2023-10-12 OER430812 OER430736 ilex 1 2023-10-12 OER430813 OER430733 illicium 1 2023-10-12 OER430814 OER430732 indigofera 1 2023-10-12 OER430815 OER430729 jackfruit 1 2023-10-12 OER430816 OER430727 jujube 1 2023-10-12 OER430817 OER430724 juncus 1 2023-10-12 OER430818 OER430723 kadsura 1 2023-10-12 OER430819 OER430720 kiwi_fruit 1 2023-10-12 OER430820 OER430718 laurus 1 2023-10-12 OER430821 OER430716 zanthoxylum 1 2023-10-12 OER430822 OER430715 wisteria 1 2023-10-12 OER430823 OER430714 wheat 1 2023-10-12 OER430824 OER430713 water_lily 1 2023-10-12 OER430825 OER430712 vernicia 1 2023-10-12 OER430826 OER430711 triadica 1 2023-10-12 OER430827 OER430710 toxicodendron 1 2023-10-12 OER430828 OER430709 taxus 1 2023-10-12 OER430829 OER430708 tamarindus 1 2023-10-12 OER430830 OER430707 syzygium 1 2023-10-12 OER430831 OER430699 sweet_potato 1 2023-10-12 OER430832 OER430698 sunflower 1 2023-10-12 OER430833 OER430697 styphnolobium 1 2023-10-12 OER430834 OER430696 stemona 1 2023-10-12 OER430835 OER430695 stachyurus 1 2023-10-12 OER430836 OER430694 speirantha 1 2023-10-12 OER430837 OER430693 soybean 1 2023-10-12 OER430838 OER430692 solidago 1 2023-10-12 OER430839 OER430691 solanum 1 2023-10-12 OER430840 OER430690 smoe 1 2023-10-12 OER430841 OER430689 silybum 1 2023-10-12 OER430842 OER430688 sesbania 1 2023-10-12 OER430843 OER430687 sedum 1 2023-10-12 OER430844 OER430686 scutellaria 1 2023-10-12 OER430845 OER430685 schisandra 1 2023-10-12 OER430846 OER430684 saraca 1 2023-10-12 OER430847 OER430683 salix 1 2023-10-12 OER430848 OER430682 sagittaria 1 2023-10-12 OER430849 OER430681 s_plebeia 1 2023-10-12 OER430850 OER430680 s_miltiorrhiza 1 2023-10-12 OER430851 OER430679 rostellularia 1 2023-10-12 OER430852 OER430678 rose 1 2023-10-12 OER430853 OER430677 robinia 1 2023-10-12 OER430854 OER430676 rice 1 2023-10-12 OER430855 OER430675 rhynchosia 1 2023-10-12 OER430856 OER430674 radish 1 2023-10-12 OER430857 OER430673 quercus 1 2023-10-12 OER430858 OER430672 punica 1 2023-10-12 OER430859 OER430671 pumpkin 1 2023-10-12 OER430860 OER430670 pterocarpus 1 2023-10-12 OER430861 OER430669 portulaca 1 2023-10-12 OER430862 OER430668 polygonum 1 2023-10-12 OER430863 OER430667 polygonatum 1 2023-10-12 OER430864 OER430666 platycodon 1 2023-10-12 OER430865 OER430665 pithecellobium 1 2023-10-12 OER430866 OER430664 pinellia 1 2023-10-12 OER430867 OER430663 physcomitrium 1 2023-10-12 OER430868 OER430662 perilla 1 2023-10-12 OER430869 OER430661 peach 1 2023-10-12 OER430870 OER430660 passiflora 1 2023-10-12 OER430871 OER430659 p_spinosa 1 2023-10-12 OER430872 OER430658 p_pedatisecta 1 2023-10-12 OER430873 OER430657 osmanthus 1 2023-10-12 OER430874 OER430656 ormosia 1 2023-10-12 OER430875 OER430655 ophiopogon 1 2023-10-12 OER430876 OER430654 oenanthe 1 2023-10-12 OER430877 OER430653 nyssa 1 2023-10-12 OER430878 OER430652 nerium 1 2023-10-12 OER430879 OER430651 nephrolepis 1 2023-10-12 OER430880 OER430650 musa 1 2023-10-12 OER430881 OER430649 morus 1 2023-10-12 OER430882 OER430648 morella 1 2023-10-12 OER430883 OER430647 michelia 1 2023-10-12 OER430884 OER430646 melia 1 2023-10-12 OER430885 OER430645 medicago 1 2023-10-12 OER430886 OER430644 marchantia 1 2023-10-12 OER430887 OER430643 maize 1 2023-10-12 OER430888 OER430642 magnolia 1 2023-10-12 OER430889 OER430641 macadamia 1 2023-10-12 OER430890 OER430640 lygodium 1 2023-10-12 OER430891 OER430639 lycium 1 2023-10-12 OER430892 OER430638 lotus 1 2023-10-12 OER430893 OER430637 lonicera 1 2023-10-12 OER430894 OER430636 liriodendron 1 2023-10-12 OER430895 OER430635 lindera 1 2023-10-12 OER430896 OER430604 leonurus 1 2023-10-12 OER430897 OER430600 lespedeza 1 2023-10-12 OER430898 OER430596 l_maackii 1 2023-10-12
Author Information
- Create Date
- 2023-10-12
- Last Modified
- 2023-10-12
- Submission
- Xuan Li
- Institute of Plant Physiology and Ecology