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  • EXPR A6_NV_11

    Ying  Yu, Fudan University, 2024.07.04

    Project ID

    OEP005441

    Project Name

    Toward best practices for detecting germline small variants: a large-scale real-world WES benchmarking study using the Quartet DNA reference materials

    Experiment Type

    Genomic

    OEX028484

  • EXPR A6_NV_12

    Ying  Yu, Fudan University, 2024.07.04

    Project ID

    OEP005441

    Project Name

    Toward best practices for detecting germline small variants: a large-scale real-world WES benchmarking study using the Quartet DNA reference materials

    Experiment Type

    Genomic

    OEX028485

  • EXPR A6_NV_13

    Ying  Yu, Fudan University, 2024.07.04

    Project ID

    OEP005441

    Project Name

    Toward best practices for detecting germline small variants: a large-scale real-world WES benchmarking study using the Quartet DNA reference materials

    Experiment Type

    Genomic

    OEX028486

  • EXPR G1_T7_00

    Ying  Yu, Fudan University, 2024.07.04

    Project ID

    OEP005441

    Project Name

    Toward best practices for detecting germline small variants: a large-scale real-world WES benchmarking study using the Quartet DNA reference materials

    Experiment Type

    Genomic

    OEX028520

  • EXPR A6_NV_14

    Ying  Yu, Fudan University, 2024.07.04

    Project ID

    OEP005441

    Project Name

    Toward best practices for detecting germline small variants: a large-scale real-world WES benchmarking study using the Quartet DNA reference materials

    Experiment Type

    Genomic

    OEX028487

  • EXPR OEX_Zeyin_2407042220

    ZI  JIAN, , 2024.07.04

    Project ID

    OEP005442

    Project Name

    CircRREB1 concatenates metabolic reprogramming and stemness maintenance to facilitate pancreatic ductal adenocarcinoma progression

    Experiment Type

    Transcriptomic

    OEX028559

  • EXPR OEX_Wenran_2407041321

    Wenran  Li, , 2024.07.04

    Project ID

    OEP005440

    Project Name

    Proteomics and metabolomics data of NSPT cohort

    Experiment Type

    Proteomic

    Protocol

    All data were processed using Firmiana, a one-stop proteomic cloud platform (https://phenomics.fudan.edu.cn/fifirmiana/). The data were searched against the UniProt human protein database (updated on 2019.12.17, 20,406 entries) using FragPipe (v12.1) with MSFragger (2.2) for DIA data and the Mascot search engine for DDA data. The mass tolerances were set at 20 ppm for precursors and 50 mmu for product ions, allowing up to two missed cleavages. Cysteine carbamido methylation was set as a fixed modification, while N-acetylation and oxidation of methionine were variable modifications. Precursor ion charge states were limited to +2, +3, and +4. Data were also searched against a decoy database to ensure protein identifications were accepted at a false discovery rate (FDR) of 1%. The results from DDA data were combined into spectra libraries using SpectraST software, creating a total of 327 reference spectra libraries.

    OEX028469

  • EXPR 2bRAD-M sequencing

    Lu  Zhao, Weifang People's Hospital, 2023.03.16

    Project ID

    OEP004048

    Project Name

    Serum and tissue microbiome (2bRAD-M sequencing) of CRC

    Experiment Type

    Metagenomic

    OEX022924

  • EXPR OEX_sui_2307161525

    sui  weikang, shanghai jiaotong univerisity, 2023.07.16

    Project ID

    OEP004265

    Project Name

    Reactive iron as an important reservoir of marine organic carbon over geological timescales

    Experiment Type

    Genomic

    OEX024472

  • EXPR OEX_Yingcheng_2407021847

    Xinwen  Yan, , 2024.07.02

    Project ID

    OEP005436

    Project Name

    FITC-ID

    Experiment Type

    Transcriptomic

    OEX028465