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  • EXPR Shuangliu GDM

    Zheng  Lab, Fudan univerisity, 2022.07.04

    Project ID

    OEP003504

    Project Name

    Shuangliu GDM

    Experiment Type

    Metagenomic

    Protocol

    Tn5 DNA Library Prep Kit for Illumina

    OEX019937

  • EXPR long-read RNA-seq

    Xiaodong  Song, Lin Gang Laboratory, 2024.07.08

    Project ID

    OEP005259

    Project Name

    Co-regulation of alternative splicing and transcription initiation and termination revealed by long-read full-length RNA sequencing

    Experiment Type

    Transcriptomic

    OEX028599

  • EXPR 16S data

    Ziyan  Wei, Institute of Microbiology, Chinese Academy of Sciences, 2023.12.19

    Project ID

    OEP004868

    Project Name

    metagenome of wastewater treatment plant

    Experiment Type

    Metagenomic

    Protocol

    PCR amplification of 16S rRNA hypervariable region V3-V4

    OEX026438

  • EXPR WGS data

    Ziyan  Wei, Institute of Microbiology, Chinese Academy of Sciences, 2023.12.13

    Project ID

    OEP004868

    Project Name

    metagenome of wastewater treatment plant

    Experiment Type

    Metagenomic

    OEX026096

  • EXPR RNA-seq of mouse IVD

    Jian  He, Army Medical University, 2023.07.19

    Project ID

    OEP004269

    Project Name

    RNA-seq of mouse IVDs

    Experiment Type

    Transcriptomic

    Protocol

    Total RNA was extracted using MGIEasy RNA toolkit (V3.0, BGI, China) and NGS sequencing was performed using DNBSEQ-2000 platform under PE150 manner (BGI, China)

    OEX024475

  • EXPR Mouse_Type_C

    Jian  He, Army Medical University, 2024.06.15

    Project ID

    OEP005392

    Project Name

    scRNA-seq of mouse Discs

    Experiment Type

    Transcriptomic single cell

    Protocol

    scRNA-seq libraries were constructed using a DNBelab C Series Single-Cell Library Prep Set (MGI, 940-001924-00). The process includes single cell encapsulation, mRNA capture, reverse transcription, and cDNA amplification in droplet emulsion. Libraries for each sample were indexed and sequenced using a MGISEQ-2000 sequencer (MGI). Raw reads embedded in fastq files were preprocessed using the pipeline of DNBelab C Series HT singlecell analysis software (https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software, V1.2). The mouse reference genome GRCm38 and gene annotation (Release M23) downloaded from GENCODE database were used to align the reads and quantify the gene expression. Count matrixes were generated after filtering out low-quality reads with default parameters.

    OEX028409

  • EXPR Mouse_Type_A

    Jian  He, Army Medical University, 2024.06.15

    Project ID

    OEP005392

    Project Name

    scRNA-seq of mouse Discs

    Experiment Type

    Transcriptomic single cell

    Protocol

    scRNA-seq libraries were constructed using a DNBelab C Series Single-Cell Library Prep Set (MGI, 940-001924-00). The process includes single cell encapsulation, mRNA capture, reverse transcription, and cDNA amplification in droplet emulsion. Libraries for each sample were indexed and sequenced using a MGISEQ-2000 sequencer (MGI). Raw reads embedded in fastq files were preprocessed using the pipeline of DNBelab C Series HT singlecell analysis software (https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software, V1.2). The mouse reference genome GRCm38 and gene annotation (Release M23) downloaded from GENCODE database were used to align the reads and quantify the gene expression. Count matrixes were generated after filtering out low-quality reads with default parameters.

    OEX028410

  • EXPR scRNA-seq

    Ruibao  Ren, Ruijin hospital affiliated to Shanghai Jiao Tong University School of Medicine, 2024.05.09

    Project ID

    OEP005257

    Project Name

    A phase 2 pilot study of umbilical cord blood infusion as an adjuvant consolidation therapy in elderly patients with acute myeloid leukemia

    Experiment Type

    Transcriptomic single cell

    OEX027800

  • EXPR Proteomics

    Xin  Li, Shanghai Institute of Nutrition and Health,CAS, 2024.06.13

    Project ID

    OEP004998

    Project Name

    Proteomic and Phosphoproteomic Profiles of Chinese Localized Prostate Cancer

    Experiment Type

    Proteomic

    OEX028405

  • EXPR Phosphoproteomics

    Xin  Li, Shanghai Institute of Nutrition and Health,CAS, 2024.06.13

    Project ID

    OEP004998

    Project Name

    Proteomic and Phosphoproteomic Profiles of Chinese Localized Prostate Cancer

    Experiment Type

    Proteomic

    OEX028406