General Information
- Project ID
- OEP000083
- Project Name
- 4sUDRB-seq of human PA1 cells, undifferentiated H9 cells and H9 differentiated FB neurons.
- Description
- We have optimized the metabolic tagging of newly transcribed RNAs by 4-thiouridine (4sU) to identify newly-transcribed (nascent) circRNAs from human PA1 cells, undifferentiated H9 cells and H9 differentiated FB neurons.
- Used ID
- NODEP00000051  
Project information
- Experiments
- 1
Experiment ID Experiment name Experiment type Create Date OEX000090 xinchangpeng_NODEX00000063 Transcriptomic 2016-09-14 - Samples
- 50
Sample ID Sample Name Sample Subject Type Organism Tissue Create Date OES002220 PA1 steady-state ribo– RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-14 OES002221 PA1 steady-state ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-14 OES002222 PA1 nascent 0min ribo– RNA Human Homo sapiens PA1 cells 2016-09-26 OES002223 PA1 nascent 10min ribo– RNA Human Homo sapiens PA1 cells 2016-09-27 OES002224 PA1 nascent 15min ribo– RNA replicate1 Human Homo sapiens PA1 cells 2016-09-27 OES002225 PA1 nascent 15min ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002226 PA1 nascent 30 min ribo– RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002227 PA1 nascent 30 min ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002228 PA1 nascent 60 min ribo– RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002229 PA1 nascent 60 min ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002230 PA1 nascent 60 min ribo– RNA replicate 3 Human Homo sapiens PA1 cells 2016-09-27 OES002231 PA1 nascent 120 min ribo– RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002232 PA1 nascent 120 min ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002233 PA1 nascent 120 min ribo– RNA replicate 3 Human Homo sapiens PA1 cells 2016-09-27 OES002234 PA1 nascent 30min ribo–/RNase R RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002235 PA1 nascent 30min ribo–/RNase R RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002236 PA1 nascent 30min ribo–/RNase R RNA replicate 3 Human Homo sapiens PA1 cells 2016-09-27 OES002237 PA1 nascent 30min ribo–/RNase R RNA replicate 4 Human Homo sapiens PA1 cells 2016-09-27 OES002238 PA1 nascent 60min ribo–/RNase R RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002239 PA1 nascent 60min ribo–/RNase R RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002240 PA1 nascent 120min ribo–/RNase R RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002241 PA1 nascent 120min ribo–/RNase R RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002242 PA1 nascent 120min ribo–/RNase R RNA replicate 3 Human Homo sapiens PA1 cells 2016-09-27 OES002243 H9 steady-state ribo– RNA Human Homo sapiens Embryonic stem cells 2016-09-27 OES002244 H9 nascent 0min ribo– RNA Human Homo sapiens Embryonic stem cells 2016-09-27 OES002245 H9 nascent 10min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002246 H9 nascent 10min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002247 H9 nascent 15min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002248 H9 nascent 15min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002249 H9 nascent 30min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002250 H9 nascent 30min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002251 H9 nascent 60min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002252 H9 nascent 60min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002253 H9 nascent 120min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002254 H9 nascent 120min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002255 FB steady-state ribo– RNA Human Homo sapiens Embryonic stem cells 2016-09-27 OES002256 FB nascent 0min ribo– RNA Human Homo sapiens Embryonic stem cells 2016-09-27 OES002257 FB nascent 10min ribo– RNA Human Homo sapiens Embryonic stem cells 2016-09-27 OES002258 FB nascent 15min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002259 FB nascent 15min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002260 FB nascent 30min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002261 FB nascent 30min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002262 FB nascent 60min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002263 FB nascent 60min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002264 FB nascent 120min ribo– RNA replicate 1 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002265 FB nascent 120min ribo– RNA replicate 2 Human Homo sapiens Embryonic stem cells 2016-09-27 OES002266 PA1 4sU 4 hr ribo– RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002267 PA1 4sU 4 hr ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 OES002268 PA1 4sU 16 hr ribo– RNA replicate 1 Human Homo sapiens PA1 cells 2016-09-27 OES002269 PA1 4sU 16 hr ribo– RNA replicate 2 Human Homo sapiens PA1 cells 2016-09-27 - Runs
-
50
Run ID Run Name Experiment Sample Data Num Create Date OER008980 xinchangpeng_NODER00000601 OEX000090 OES002220 1 2016-09-26 OER008981 xinchangpeng_NODER00000602 OEX000090 OES002221 1 2016-09-26 OER008982 xinchangpeng_NODER00000603 OEX000090 OES002222 1 2016-09-26 OER008983 xinchangpeng_NODER00000604 OEX000090 OES002256 1 2016-09-26 OER008984 xinchangpeng_NODER00000605 OEX000090 OES002257 1 2016-09-26 OER008985 xinchangpeng_NODER00000606 OEX000090 OES002264 1 2016-09-26 OER008986 xinchangpeng_NODER00000607 OEX000090 OES002265 1 2016-09-26 OER008987 xinchangpeng_NODER00000608 OEX000090 OES002258 1 2016-09-26 OER008988 xinchangpeng_NODER00000609 OEX000090 OES002259 1 2016-09-26 OER008989 xinchangpeng_NODER00000610 OEX000090 OES002260 1 2016-09-26 OER008990 xinchangpeng_NODER00000611 OEX000090 OES002261 1 2016-09-26 OER008991 xinchangpeng_NODER00000612 OEX000090 OES002262 1 2016-09-26 OER008992 xinchangpeng_NODER00000613 OEX000090 OES002263 1 2016-09-26 OER008993 xinchangpeng_NODER00000614 OEX000090 OES002255 1 2016-09-26 OER008994 xinchangpeng_NODER00000615 OEX000090 OES002244 1 2016-09-26 OER008995 xinchangpeng_NODER00000616 OEX000090 OES002245 1 2016-09-26 OER008996 xinchangpeng_NODER00000617 OEX000090 OES002246 1 2016-09-26 OER008997 xinchangpeng_NODER00000618 OEX000090 OES002253 1 2016-09-26 OER008998 xinchangpeng_NODER00000619 OEX000090 OES002254 1 2016-09-26 OER008999 xinchangpeng_NODER00000620 OEX000090 OES002247 1 2016-09-26 OER009000 xinchangpeng_NODER00000621 OEX000090 OES002248 1 2016-09-26 OER009001 xinchangpeng_NODER00000622 OEX000090 OES002249 1 2016-09-26 OER009002 xinchangpeng_NODER00000623 OEX000090 OES002250 1 2016-09-26 OER009003 xinchangpeng_NODER00000624 OEX000090 OES002251 1 2016-09-26 OER009004 xinchangpeng_NODER00000625 OEX000090 OES002252 1 2016-09-26 OER009005 xinchangpeng_NODER00000626 OEX000090 OES002243 1 2016-09-26 OER009006 xinchangpeng_NODER00000627 OEX000090 OES002268 1 2016-09-26 OER009007 xinchangpeng_NODER00000628 OEX000090 OES002269 1 2016-09-26 OER009008 xinchangpeng_NODER00000629 OEX000090 OES002266 1 2016-09-26 OER009009 xinchangpeng_NODER00000630 OEX000090 OES002267 1 2016-09-26 OER009010 xinchangpeng_NODER00000631 OEX000090 OES002223 1 2016-09-26 OER009011 xinchangpeng_NODER00000632 OEX000090 OES002231 1 2016-09-26 OER009012 xinchangpeng_NODER00000633 OEX000090 OES002232 1 2016-09-26 OER009013 xinchangpeng_NODER00000634 OEX000090 OES002233 1 2016-09-26 OER009014 xinchangpeng_NODER00000635 OEX000090 OES002224 1 2016-09-26 OER009015 xinchangpeng_NODER00000636 OEX000090 OES002225 1 2016-09-26 OER009016 xinchangpeng_NODER00000637 OEX000090 OES002226 1 2016-09-26 OER009017 xinchangpeng_NODER00000638 OEX000090 OES002227 1 2016-09-26 OER009018 xinchangpeng_NODER00000639 OEX000090 OES002228 1 2016-09-26 OER009019 xinchangpeng_NODER00000640 OEX000090 OES002229 1 2016-09-26 OER009020 xinchangpeng_NODER00000641 OEX000090 OES002230 1 2016-09-26 OER009021 xinchangpeng_NODER00000642 OEX000090 OES002240 1 2016-09-26 OER009022 xinchangpeng_NODER00000643 OEX000090 OES002241 1 2016-09-26 OER009023 xinchangpeng_NODER00000644 OEX000090 OES002242 1 2016-09-26 OER009024 xinchangpeng_NODER00000645 OEX000090 OES002234 1 2016-09-26 OER009025 xinchangpeng_NODER00000646 OEX000090 OES002235 1 2016-09-26 OER009026 xinchangpeng_NODER00000647 OEX000090 OES002236 1 2016-09-26 OER009027 xinchangpeng_NODER00000648 OEX000090 OES002237 1 2016-09-26 OER009028 xinchangpeng_NODER00000649 OEX000090 OES002238 1 2016-09-26 OER009029 xinchangpeng_NODER00000650 OEX000090 OES002239 1 2016-09-26
Author Information
- Create Date
- 2016-09-14
- Last Modified
- 2018-12-26
- Submission
- Changpeng Xin
- PICB