General Information
- Project ID
- OEP000216
- Project Name
- Structure and degradation of circular RNAs regulate PKR activation in innate immunity
- Description
- CircRNAs produced from back-splicing of exons of pre-mRNAs are widely expressed, but current understanding of their functions is limited. These RNAs are stable in general and are thought to have unique structural conformations distinct from their linear RNA cognates. Here we uncover that endogenous circRNAs tend to form 16-26 bp RNA duplexes and act as inhibitors of dsRNA-activated protein kinase (PKR) related to innate immunity. Upon poly(I:C) stimulation or viral infection, circRNAs are globally degraded by RNase L, a process required for PKR activation in early cellular innate immune responses. Augmented PKR phosphorylation and circRNA reduction are found in peripheral blood mononuclear cells (PBMCs) derived from patients of autoimmune disease systemic lupus erythematosus (SLE). Importantly, over-expression of the dsRNA-containing circRNA in PBMCs or T cells derived from SLE can alleviate the aberrant PKR activation cascade, thus providing a connection between circRNAs and SLE.
- Publications
-
Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity
Liu, CX, Li X, Nan F, Jiang S, Gao X, Guo SK, & Xue W, et.al. Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity. CELL.
(PMID: 31031002) (DOI: 10.1016/j.cell.2019.03.046)
Project information
- Experiments
- 4
Experiment ID Experiment name Experiment type Create Date OEX001577 EMCV infection HeLa cell Transcriptomic 2019-01-19 OEX001578 HeLa cell or RNaseL KO HeLa with or without poly(I:C) stimulation Transcriptomic 2019-01-19 OEX001617 SLE patient and normal donors RNA-seq data Transcriptomic 2019-02-15 OEX001618 SHAPE-MaP Transcriptomic 2019-02-15 - Samples
- 64
Sample ID Sample Name Sample Subject Type Organism Tissue Create Date OES014382 HeLa WT poly(A)+ Human Homo sapiens N/A 2019-01-19 OES014416 HeLa WT poly(A)– Cell line Homo sapiens N/A 2019-01-28 OES014417 HeLa EMCV poly(A)+ Cell line Homo sapiens N/A 2019-01-28 OES014418 HeLa EMCV poly(A)– Cell line Homo sapiens N/A 2019-01-28 OES014419 HeLa ctrl poly(A)+ Cell line Homo sapiens N/A 2019-01-28 OES014420 HeLa poly(I:C) poly(A)+ Cell line Homo sapiens N/A 2019-01-28 OES014421 HeLa RNaseL KO ctrl poly(A)+ Cell line Homo sapiens N/A 2019-01-28 OES014422 HeLa RNaseL KO poly(I:C) poly(A)+ Cell line Homo sapiens N/A 2019-01-28 OES014423 HeLa RNaseL KO ctrl poly(A)– Cell line Homo sapiens N/A 2019-01-28 OES014424 HeLa RNaseL KO poly(I:C) poly(A)– Cell line Homo sapiens N/A 2019-01-28 OES014425 HeLa poly(I:C) poly(A)– Cell line Homo sapiens N/A 2019-01-28 OES014426 HeLa ctrl poly(A)– Cell line Homo sapiens N/A 2019-01-28 OES014927 Monoctye normal donors Human Homo sapiens N/A 2019-02-15 OES014928 Monocyte SLE patient Human Homo sapiens N/A 2019-02-15 OES014929 Bcell normal donors Human Homo sapiens B cell 2019-02-15 OES014930 Bcell SLE patient Human Homo sapiens B cell 2019-02-15 OES014931 Tcell normal donors Human Homo sapiens T cell 2019-02-15 OES014932 Tcell SLE patient Human Homo sapiens T cell 2019-02-15 OES014933 01_circCAMSAP1 Human Homo sapiens PA1 2019-02-15 OES014934 01_linearCAMSAP1 Human Homo sapiens PA1 2019-02-15 OES014935 02_circCCNB1 Human Homo sapiens PA1 2019-02-15 OES014936 02_linearCCNB1 Human Homo sapiens PA1 2019-02-15 OES014937 03_circEPHB4 Human Homo sapiens PA1 2019-02-15 OES014938 03_linearEPHB4 Human Homo sapiens PA1 2019-02-15 OES014939 04_circEZH2 Human Homo sapiens PA1 2019-02-15 OES014940 04_linearEZH2 Human Homo sapiens PA1 2019-02-15 OES014941 05_circFCHO2 Human Homo sapiens PA1 2019-02-15 OES014942 05_linearFCHO2 Human Homo sapiens PA1 2019-02-15 OES014943 06_circFGFR1_1 Human Homo sapiens PA1 2019-02-15 OES014944 06_linearFGFR1_1 Human Homo sapiens PA1 2019-02-15 OES014945 07_circPOLR2A Human Homo sapiens PA1 2019-02-16 OES014946 07_linearPOLR2A Human Homo sapiens PA1 2019-02-16 OES014947 08_circPVT1 Human Homo sapiens PA1 2019-02-16 OES014948 08_linearPVT1 Human Homo sapiens PA1 2019-02-16 OES014949 09_circRELL1 Human Homo sapiens PA1 2019-02-16 OES014950 09_linearRELL1 Human Homo sapiens PA1 2019-02-16 OES014951 10_circSDHAF2 Human Homo sapiens PA1 2019-02-16 OES014952 10_linearSDHAF2 Human Homo sapiens PA1 2019-02-16 OES014953 11_circTBCD Human Homo sapiens PA1 2019-02-16 OES014954 11_linearTBCD Human Homo sapiens PA1 2019-02-16 OES014955 12_circUIMC1 Human Homo sapiens PA1 2019-02-16 OES014956 12_linearUIMC1 Human Homo sapiens PA1 2019-02-16 OES014957 13_circARID1B Human Homo sapiens PA1 2019-02-16 OES014958 14_circCNN2 Human Homo sapiens PA1 2019-02-16 OES014959 15_circDHX34 Human Homo sapiens PA1 2019-02-16 OES014960 16_circFKBP8 Human Homo sapiens PA1 2019-02-16 OES014961 17_circKIAA0368 Human Homo sapiens PA1 2019-02-16 OES014962 18_circMBOAT2 Human Homo sapiens PA1 2019-02-16 OES014963 19_circPIP5K1C Human Homo sapiens PA1 2019-02-16 OES014964 20_circPPP1CB Human Homo sapiens PA1 2019-02-16 OES014965 21_circPROSC Human Homo sapiens PA1 2019-02-16 OES014966 22_circPTK2 Human Homo sapiens PA1 2019-02-16 OES014967 23_circSLC22A23 Human Homo sapiens PA1 2019-02-16 OES014968 24_circSNHG4 Human Homo sapiens PA1 2019-02-16 OES014969 25_circTMEM181 Human Homo sapiens PA1 2019-02-16 OES014970 26_circVAPB Human Homo sapiens PA1 2019-02-16 OES014971 27_circASAP1 Human Homo sapiens PA1 2019-02-16 OES014972 28_circASXL1 Human Homo sapiens PA1 2019-02-16 OES014973 29_circDYNC1H1 Human Homo sapiens PA1 2019-02-16 OES014974 30_circFGFR1_2 Human Homo sapiens PA1 2019-02-16 OES014975 31_circLDLRAD3 Human Homo sapiens PA1 2019-02-16 OES014976 32_circPHF21A Human Homo sapiens PA1 2019-02-16 OES014977 33_circRTN4 Human Homo sapiens PA1 2019-02-16 OES014978 34_circSMARCA5 Human Homo sapiens PA1 2019-02-16 - Runs
-
210
Run ID Run Name Experiment Sample Data Num Create Date OER025788 HeLa WT poly(A)+ rep2 OEX001577 OES014382 2 2019-01-28 OER025789 HeLa WT poly(A)+ rep1 OEX001577 OES014382 2 2019-01-28 OER025790 HeLa WT poly(A)– rep2 OEX001577 OES014416 2 2019-01-28 OER025791 HeLa WT poly(A)– rep1 OEX001577 OES014416 2 2019-01-28 OER025792 HeLa EMCV poly(A)+ rep2 OEX001577 OES014417 2 2019-01-28 OER025793 HeLa EMCV poly(A)+ rep1 OEX001577 OES014417 2 2019-01-28 OER025794 HeLa EMCV poly(A)– rep2 OEX001577 OES014418 2 2019-01-28 OER025795 HeLa EMCV poly(A)– rep1 OEX001577 OES014418 2 2019-01-28 OER025796 HeLa RNaseL KO ctrl poly(A)– rep1 OEX001578 OES014423 2 2019-01-28 OER025797 HeLa RNaseL KO ctrl poly(A)– rep2 OEX001578 OES014423 2 2019-01-28 OER025798 HeLa RNaseL KO ctrl poly(A)+ OEX001578 OES014421 2 2019-01-28 OER025799 HeLa RNaseL KO poly(I:C) poly(A)– rep1 OEX001578 OES014424 2 2019-01-28 OER025800 HeLa RNaseL KO poly(I:C) poly(A)– rep2 OEX001578 OES014424 2 2019-01-28 OER025801 HeLa RNaseL KO poly(I:C) poly(A)+ OEX001578 OES014422 2 2019-01-28 OER025802 HeLa ctrl poly(A)– rep1 OEX001578 OES014426 2 2019-01-28 OER025803 HeLa ctrl poly(A)– rep2 OEX001578 OES014426 2 2019-01-28 OER025804 HeLa poly(I:C) poly(A)– rep1 OEX001578 OES014425 2 2019-01-28 OER025805 HeLa poly(I:C) poly(A)– rep2 OEX001578 OES014425 2 2019-01-28 OER025806 HeLa poly(I:C) poly(A)+ OEX001578 OES014420 2 2019-01-28 OER025807 HeLa ctrl poly(A)+ OEX001578 OES014419 2 2019-01-28 OER027277 Monoctye_normal_ribo(–) OEX001617 OES014927 2 2019-02-15 OER027278 Monocyte_SLE_ribo(–) OEX001617 OES014928 2 2019-02-15 OER027279 Bcell_normal_ribo(–) OEX001617 OES014929 2 2019-02-15 OER027280 Bcell_SLE_ribo(–) OEX001617 OES014930 2 2019-02-15 OER027281 Tcell_SLE_ribo(–) OEX001617 OES014932 2 2019-02-15 OER027282 Tcell_normal_ribo(–) OEX001617 OES014931 2 2019-02-15 OER027283 01_circCAMSAP1_DC OEX001618 OES014933 2 2019-02-15 OER027284 01_circCAMSAP1_DMSO OEX001618 OES014933 2 2019-02-15 OER027285 01_circCAMSAP1_NAI_rep1 OEX001618 OES014933 2 2019-02-15 OER027286 01_circCAMSAP1_NAI_rep2 OEX001618 OES014933 2 2019-02-15 OER027287 01_linearCAMSAP1_DC OEX001618 OES014934 2 2019-02-15 OER027288 01_linearCAMSAP1_DMSO OEX001618 OES014934 2 2019-02-15 OER027289 01_linearCAMSAP1_NAI_rep1 OEX001618 OES014934 2 2019-02-15 OER027290 01_linearCAMSAP1_NAI_rep2 OEX001618 OES014934 2 2019-02-15 OER027291 02_circCCNB1_DC OEX001618 OES014935 2 2019-02-15 OER027292 02_linearCCNB1_DMSO OEX001618 OES014935 2 2019-02-15 OER027293 02_linearCCNB1_NAI_rep1 OEX001618 OES014935 2 2019-02-15 OER027294 02_linearCCNB1_NAI_rep2 OEX001618 OES014935 2 2019-02-15 OER027295 02_linearCCNB1 OEX001618 OES014936 2 2019-02-15 OER027296 02_linearCCNB1_DMSO OEX001618 OES014936 2 2019-02-15 OER027297 02_linearCCNB1_NAI_rep1 OEX001618 OES014936 2 2019-02-15 OER027298 02_linearCCNB1_NAI_rep2 OEX001618 OES014936 2 2019-02-15 OER027299 03_circEPHB4_DC OEX001618 OES014937 2 2019-02-15 OER027300 03_circEPHB4_DMSO OEX001618 OES014937 2 2019-02-15 OER027301 03_circEPHB4_NAI_rep1 OEX001618 OES014937 2 2019-02-15 OER027302 03_circEPHB4_NAI_rep2 OEX001618 OES014937 2 2019-02-15 OER027303 03_linearEPHB4_DC OEX001618 OES014938 2 2019-02-15 OER027304 03_linearEPHB4_DMSO OEX001618 OES014938 2 2019-02-15 OER027305 03_linearEPHB4_NAI_rep1 OEX001618 OES014938 2 2019-02-15 OER027306 03_linearEPHB4_NAI_rep2 OEX001618 OES014938 2 2019-02-15 OER027307 04_circEZH2_DC OEX001618 OES014939 2 2019-02-15 OER027308 04_circEZH2_DMSO OEX001618 OES014939 2 2019-02-15 OER027309 04_circEZH2_NAI_rep1 OEX001618 OES014939 2 2019-02-15 OER027310 04_circEZH2_NAI_rep2 OEX001618 OES014939 2 2019-02-15 OER027311 04_linearEZH2_DC OEX001618 OES014940 2 2019-02-15 OER027312 04_linearEZH2_DMSO OEX001618 OES014940 2 2019-02-15 OER027313 04_linearEZH2_NAI_rep1 OEX001618 OES014940 2 2019-02-15 OER027314 04_linearEZH2_NAI_rep2 OEX001618 OES014940 2 2019-02-15 OER027315 05_circFCHO2_DC OEX001618 OES014941 2 2019-02-15 OER027316 05_circFCHO2_DMSO OEX001618 OES014941 2 2019-02-15 OER027317 05_circFCHO2_NAI_rep1 OEX001618 OES014941 2 2019-02-15 OER027318 05_circFCHO2_NAI_rep2 OEX001618 OES014941 2 2019-02-15 OER027319 05_linearFCHO2_DC OEX001618 OES014942 2 2019-02-15 OER027320 05_linearFCHO2_DMSO OEX001618 OES014942 2 2019-02-15 OER027321 05_linearFCHO2_NAI_rep1 OEX001618 OES014942 2 2019-02-15 OER027322 05_linearFCHO2_NAI_rep2 OEX001618 OES014942 2 2019-02-15 OER027323 06_circFGFR1_1_DC OEX001618 OES014943 2 2019-02-15 OER027324 06_circFGFR1_1_DMSO OEX001618 OES014943 2 2019-02-15 OER027325 06_circFGFR1_1_NAI_rep1 OEX001618 OES014943 2 2019-02-15 OER027326 06_circFGFR1_1_NAI_rep2 OEX001618 OES014943 2 2019-02-15 OER027327 06_linearFGFR1_1_DC OEX001618 OES014944 2 2019-02-15 OER027328 06_linearFGFR1_1_DMSO OEX001618 OES014944 2 2019-02-15 OER027329 06_linearFGFR1_1_NAI_rep1 OEX001618 OES014944 2 2019-02-15 OER027330 06_linearFGFR1_1_NAI_rep2 OEX001618 OES014944 2 2019-02-15 OER027331 07_circPOLR2A_DC OEX001618 OES014945 2 2019-02-16 OER027332 07_circPOLR2A_DMSO OEX001618 OES014945 2 2019-02-16 OER027333 07_circPOLR2A_NAI_rep1 OEX001618 OES014945 2 2019-02-16 OER027334 07_circPOLR2A_NAI_rep2 OEX001618 OES014945 2 2019-02-16 OER027335 07_linearPOLR2A_DC OEX001618 OES014946 2 2019-02-16 OER027336 07_circPOLR2A_DMSO OEX001618 OES014946 2 2019-02-16 OER027337 07_linearPOLR2A_NAI_rep1 OEX001618 OES014946 2 2019-02-16 OER027338 07_linearPOLR2A_NAI_rep2 OEX001618 OES014946 2 2019-02-16 OER027339 08_circPVT1_DC OEX001618 OES014947 2 2019-02-16 OER027340 08_circPVT1_DMSO OEX001618 OES014947 2 2019-02-16 OER027341 08_circPVT1_NAI_rep1 OEX001618 OES014947 2 2019-02-16 OER027342 08_circPVT1_NAI_rep2 OEX001618 OES014947 2 2019-02-16 OER027343 08_linearPVT1_DC OEX001618 OES014948 2 2019-02-16 OER027344 08_linearPVT1_DMSO OEX001618 OES014948 2 2019-02-16 OER027345 08_linearPVT1_NAI_rep1 OEX001618 OES014948 2 2019-02-16 OER027346 08_linearPVT1_NAI_rep2 OEX001618 OES014948 2 2019-02-16 OER027347 09_circRELL1_DC OEX001618 OES014949 2 2019-02-16 OER027348 09_circRELL1_DMSO OEX001618 OES014949 2 2019-02-16 OER027349 09_circRELL1_NAI_rep1 OEX001618 OES014949 2 2019-02-16 OER027350 09_circRELL1_NAI_rep2 OEX001618 OES014949 2 2019-02-16 OER027351 09_linearRELL1_DC OEX001618 OES014950 2 2019-02-16 OER027352 09_linearRELL1_DMSO OEX001618 OES014950 2 2019-02-16 OER027353 09_linearRELL1_NAI_rep1 OEX001618 OES014950 2 2019-02-16 OER027354 09_linearRELL1_NAI_rep2 OEX001618 OES014950 2 2019-02-16 OER027355 10_circSDHAF2_DC OEX001618 OES014951 2 2019-02-16 OER027356 10_SDHAF2_DMSO OEX001618 OES014951 2 2019-02-16 OER027357 10_circSDHAF2_NAI_rep1 OEX001618 OES014951 2 2019-02-16 OER027358 10_circSDHAF2_NAI_rep2 OEX001618 OES014951 2 2019-02-16 OER027359 10_linearSDHAF2_DC OEX001618 OES014952 2 2019-02-16 OER027360 10_linearSDHAF2_DMSO OEX001618 OES014952 2 2019-02-16 OER027361 10_linearSDHAF2_NAI_rep1 OEX001618 OES014952 2 2019-02-16 OER027362 10_linearSDHAF2_NAI_rep2 OEX001618 OES014952 2 2019-02-16 OER027363 11_circTBCD_DC OEX001618 OES014953 2 2019-02-16 OER027364 11_circTBCD_DMSO OEX001618 OES014953 2 2019-02-16 OER027365 11_circTBCD_NAI_rep1 OEX001618 OES014953 2 2019-02-16 OER027366 11_circTBCD_NAI_rep2 OEX001618 OES014953 2 2019-02-16 OER027367 11_linearTBCD_DC OEX001618 OES014954 2 2019-02-16 OER027368 11_linearTBCD_DMSO OEX001618 OES014954 2 2019-02-16 OER027369 11_linearTBCD_NAI_rep1 OEX001618 OES014954 2 2019-02-16 OER027370 11_linearTBCD_NAI_rep2 OEX001618 OES014954 2 2019-02-16 OER027371 12_circUIMC1_DC OEX001618 OES014955 2 2019-02-16 OER027372 12_circUIMC1_DMSO OEX001618 OES014955 2 2019-02-16 OER027373 12_circUIMC1_NAI_rep1 OEX001618 OES014955 2 2019-02-16 OER027374 12_circUIMC1_NAI_rep2 OEX001618 OES014955 2 2019-02-16 OER027375 12_linearUIMC1_DC OEX001618 OES014956 2 2019-02-16 OER027376 12_linearUIMC1_DMSO OEX001618 OES014956 2 2019-02-16 OER027377 12_linearUIMC1_NAI_rep1 OEX001618 OES014956 2 2019-02-16 OER027378 12_linearUIMC1_NAI_rep2 OEX001618 OES014956 2 2019-02-16 OER027379 13_circARID1B_DC OEX001618 OES014957 2 2019-02-16 OER027380 13_circARID1B_DMSO OEX001618 OES014957 2 2019-02-16 OER027381 13_circARID1B_NAI_rep1 OEX001618 OES014957 2 2019-02-16 OER027382 13_circARID1B_NAI_rep2 OEX001618 OES014957 2 2019-02-16 OER027383 14_circCNN2_DC OEX001618 OES014958 2 2019-02-16 OER027384 14_circCNN2_DMSO OEX001618 OES014958 2 2019-02-16 OER027385 14_circCNN2_NAI_rep1 OEX001618 OES014958 2 2019-02-16 OER027386 14_circCNN2_NAI_rep2 OEX001618 OES014958 2 2019-02-16 OER027387 15_circDHX34_DC OEX001618 OES014959 2 2019-02-16 OER027388 15_circDHX34_DMSO OEX001618 OES014959 2 2019-02-16 OER027389 15_circDHX34_NAI_rep1 OEX001618 OES014959 2 2019-02-16 OER027390 15_circDHX34_NAI_rep2 OEX001618 OES014959 2 2019-02-16 OER027391 16_circFKBP8_DC OEX001618 OES014960 2 2019-02-16 OER027392 16_circFKBP8_DMSO OEX001618 OES014960 2 2019-02-16 OER027393 16_circFKBP8_NAI_rep1 OEX001618 OES014960 2 2019-02-16 OER027394 16_circFKBP8_NAI_rep2 OEX001618 OES014960 2 2019-02-16 OER027395 17_circKIAA0368_DC OEX001618 OES014961 2 2019-02-16 OER027396 17_circKIAA0368_DMSO OEX001618 OES014961 2 2019-02-16 OER027397 17_circKIAA0368_NAI_rep1 OEX001618 OES014961 2 2019-02-16 OER027398 17_circKIAA0378_NAI_rep2 OEX001618 OES014961 2 2019-02-16 OER027399 18_circMBOAT2_DC OEX001618 OES014962 2 2019-02-16 OER027400 18_circMBOAT2_DMSO OEX001618 OES014962 2 2019-02-16 OER027401 18_circMBOAT2_NAI_rep1 OEX001618 OES014962 2 2019-02-16 OER027402 18_circMBOAT2_NAI_rep2 OEX001618 OES014962 2 2019-02-16 OER027403 19_circPIP5K1C_DC OEX001618 OES014963 2 2019-02-16 OER027404 19_circPIP5K1C_DMSO OEX001618 OES014963 2 2019-02-16 OER027405 19_circPIP5K1C_NAI_rep1 OEX001618 OES014963 2 2019-02-16 OER027406 19_circPIP5K1C_NAI_rep2 OEX001618 OES014963 2 2019-02-16 OER027407 20_circPPP1CB_DC OEX001618 OES014964 2 2019-02-16 OER027408 20_circPPP1CB_DMSO OEX001618 OES014964 2 2019-02-16 OER027409 20_circPPP1CB_NAI_rep1 OEX001618 OES014964 2 2019-02-16 OER027410 20_circPPP1CB_NAI_rep2 OEX001618 OES014964 2 2019-02-16 OER027411 21_circPROSC_DC OEX001618 OES014965 2 2019-02-16 OER027412 21_circPROSC_DMSO OEX001618 OES014965 2 2019-02-16 OER027413 21_circPROSC_NAI_rep1 OEX001618 OES014965 2 2019-02-16 OER027414 21_circPROSC_NAI_rep2 OEX001618 OES014965 2 2019-02-16 OER027415 22_circPTK2_DC OEX001618 OES014966 2 2019-02-16 OER027416 22_circPTK2_DMSO OEX001618 OES014966 2 2019-02-16 OER027417 22_circPTK2_NAI_rep1 OEX001618 OES014966 2 2019-02-16 OER027418 22_circPTK2_NAI_rep2 OEX001618 OES014966 2 2019-02-16 OER027419 23_circSLC22A23_DC OEX001618 OES014967 2 2019-02-16 OER027420 23_circSLC22A23_DMSO OEX001618 OES014967 2 2019-02-16 OER027421 23_circSLC22A23_NAI_rep1 OEX001618 OES014967 2 2019-02-16 OER027422 23_circSLC22A23_NAI_rep2 OEX001618 OES014967 2 2019-02-16 OER027423 24_circSNHG4_DC OEX001618 OES014968 2 2019-02-16 OER027424 24_circSNHG4_DMSO OEX001618 OES014968 2 2019-02-16 OER027425 24_circSNHG4_NAI_rep1 OEX001618 OES014968 2 2019-02-16 OER027426 24_circSNHG4_NAI_rep2 OEX001618 OES014968 2 2019-02-16 OER027427 25_circTMEM181_DC OEX001618 OES014969 2 2019-02-16 OER027428 25_circTMEM181_DMSO OEX001618 OES014969 2 2019-02-16 OER027429 25_circTMEM181_NAI_rep1 OEX001618 OES014969 2 2019-02-16 OER027430 25_circTMEM181_NAI_rep2 OEX001618 OES014969 2 2019-02-16 OER027431 26_circVAPB_DC OEX001618 OES014970 2 2019-02-16 OER027432 26_circVAPB_DMSO OEX001618 OES014970 2 2019-02-16 OER027433 26_circVAPB_NAI_rep1 OEX001618 OES014970 2 2019-02-16 OER027434 26_circVAPB_NAI_rep2 OEX001618 OES014970 2 2019-02-16 OER027435 27_circASAP1_DC OEX001618 OES014971 2 2019-02-16 OER027436 27_circASAP1_DMSO OEX001618 OES014971 2 2019-02-16 OER027437 27_circASAP1_NAI_rep1 OEX001618 OES014971 2 2019-02-16 OER027438 27_circASAP1_NAI_rep2 OEX001618 OES014971 2 2019-02-16 OER027439 28_circASXL1_DC OEX001618 OES014972 2 2019-02-16 OER027440 28_circASXL1_DMSO OEX001618 OES014972 2 2019-02-16 OER027441 28_circASXL1_NAI_rep1 OEX001618 OES014972 2 2019-02-16 OER027442 28_circASXL1_NAI_rep2 OEX001618 OES014972 2 2019-02-16 OER027443 29_circDYNC1H1_DC OEX001618 OES014973 2 2019-02-16 OER027444 29_circDYNC1H1_DMSO OEX001618 OES014973 2 2019-02-16 OER027445 29_circDYNC1H1_NAI_rep1 OEX001618 OES014973 2 2019-02-16 OER027446 29_circDYNC1H1_NAI_rep2 OEX001618 OES014973 2 2019-02-16 OER027447 30_circFGFR1_2_DC OEX001618 OES014974 2 2019-02-16 OER027448 30_circFGFR1_2_DMSO OEX001618 OES014974 2 2019-02-16 OER027449 30_circFGFR1_2_NAI_rep1 OEX001618 OES014974 2 2019-02-16 OER027450 30_circFGFR1_2_NAI_rep2 OEX001618 OES014974 2 2019-02-16 OER027451 31_circLDLRAD3_DC OEX001618 OES014975 2 2019-02-16 OER027452 31_circLDLRAD3_DMSO OEX001618 OES014975 2 2019-02-16 OER027453 31_circLDLRAD3_NAI_rep1 OEX001618 OES014975 2 2019-02-16 OER027454 31_circLDLRAD3_NAI_rep2 OEX001618 OES014975 2 2019-02-16 OER027455 32_circPHF21A_DC OEX001618 OES014976 2 2019-02-16 OER027456 32_circPHF21A_DMSO OEX001618 OES014976 2 2019-02-16 OER027457 32_circPHF21A_NAI_rep1 OEX001618 OES014976 2 2019-02-16 OER027458 32_circPHF21A_NAI_rep2 OEX001618 OES014976 2 2019-02-16 OER027459 33_circRTN4_DC OEX001618 OES014977 2 2019-02-16 OER027460 33_circRTN4_DMSO OEX001618 OES014977 2 2019-02-16 OER027461 33_circRTN4_NAI_rep1 OEX001618 OES014977 2 2019-02-16 OER027462 33_circRTN4_NAI_rep2 OEX001618 OES014977 2 2019-02-16 OER027463 34_circSMARCA5_DC OEX001618 OES014978 2 2019-02-16 OER027464 34_circSMARCA5_DMSO OEX001618 OES014978 2 2019-02-16 OER027465 34_circSMARCA5_NAI_rep1 OEX001618 OES014978 2 2019-02-16 OER027466 34_circSMARCA5_NAI_rep2 OEX001618 OES014978 2 2019-02-16 - Analysis
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72
Analysis ID Analysis Title Analysis Type Data Date OEZ004309 HeLa ctrl poly(A)+ Reference Alignment 1 2019-01-28 OEZ004310 HeLa poly(I:C) poly(A)+ RNA Reference Alignment 1 2019-01-28 OEZ004311 HeLa ctrl poly(A)– RNA rep1 Reference Alignment 2 2019-01-28 OEZ004312 HeLa ctrl poly(A)– RNA rep2 Reference Alignment 2 2019-01-28 OEZ004313 HeLa poly(I:C) poly(A)– RNA rep1 Reference Alignment 2 2019-01-28 OEZ004314 HeLa poly(I:C) poly(A)– RNA rep2 Reference Alignment 2 2019-01-28 OEZ004315 HeLa RNaseL KO ctrl poly(A)+ RNA Reference Alignment 1 2019-01-28 OEZ004316 HeLa RNaseL KO poly(I:C) poly(A)+ RNA Reference Alignment 1 2019-01-28 OEZ004317 HeLa RNaseL KO ctrl poly(A)– RNA rep1 Reference Alignment 2 2019-01-28 OEZ004318 HeLa RNaseL KO ctrl poly(A)– RNA rep2 Reference Alignment 2 2019-01-28 OEZ004319 HeLa RNaseL KO poly(I:C) poly(A)– RNA rep1 Reference Alignment 2 2019-01-28 OEZ004320 HeLa RNaseL KO poly(I:C) poly(A)– RNA rep2 Reference Alignment 2 2019-01-28 OEZ004321 HeLa WT ctrl poly(A)+ RNA rep1 Reference Alignment 1 2019-01-28 OEZ004323 HeLa EMCV poly(A)+ RNA rep1 Reference Alignment 1 2019-01-28 OEZ004324 HeLa EMCV poly(A)+ RNA rep2 Reference Alignment 1 2019-01-28 OEZ004325 HeLa WT ctrl poly(A)– RNA rep1 Reference Alignment 2 2019-01-28 OEZ004326 HeLa WT ctrl poly(A)– RNA rep2 Reference Alignment 2 2019-01-28 OEZ004327 HeLa EMCV poly(A)– RNA rep1 Reference Alignment 2 2019-01-28 OEZ004328 HeLa EMCV poly(A)– RNA rep2 Reference Alignment 2 2019-01-28 OEZ004329 HeLa WT ctrl poly(A)+ RNA rep2 Reference Alignment 1 2019-01-29 OEZ004333 Monocyte normal Reference Alignment 2 2019-02-15 OEZ004334 Monocyte SLE patient Reference Alignment 2 2019-02-15 OEZ004335 Bcell normal donor Reference Alignment 2 2019-02-15 OEZ004336 Bcell SLE patient Reference Alignment 2 2019-02-15 OEZ004337 Tcell normal donors Reference Alignment 2 2019-02-15 OEZ004338 Tcell SLE patient Reference Alignment 2 2019-02-15 OEZ004339 01_circCAMSAP1 Other 1 2019-02-15 OEZ004340 01_linearCAMSAP1 Other 1 2019-02-15 OEZ004341 02_circCCNB1 Other 1 2019-02-15 OEZ004342 02_linearCCNB1 Other 1 2019-02-15 OEZ004343 03_circEPHB4 Other 1 2019-02-15 OEZ004344 03_linearEPHB4 Other 1 2019-02-15 OEZ004345 04_circEZH2 Other 1 2019-02-15 OEZ004346 04_linearEZH2 Other 1 2019-02-15 OEZ004347 05_circFCHO2 Other 1 2019-02-15 OEZ004348 05_linearFCHO2 Other 1 2019-02-15 OEZ004349 06_circFGFR1_1 Other 1 2019-02-15 OEZ004350 06_linearFGFR1_1 Other 1 2019-02-15 OEZ004352 07_circPOLR2A Other 1 2019-02-16 OEZ004353 07_linearPOLR2A Other 1 2019-02-16 OEZ004354 08_circPVT1 Other 1 2019-02-16 OEZ004355 08_linearPVT1 Other 1 2019-02-16 OEZ004356 09_circRELL1 Other 1 2019-02-16 OEZ004357 09_linearRELL1 Other 1 2019-02-16 OEZ004358 10_circSDHAF2 Other 1 2019-02-16 OEZ004359 10_linearSDHAF2 Other 1 2019-02-16 OEZ004360 11_circTBCD Other 1 2019-02-16 OEZ004361 11_linearTBCD Other 1 2019-02-16 OEZ004362 12_circUIMC1 Other 1 2019-02-16 OEZ004363 12_linearUIMC1 Other 1 2019-02-16 OEZ004364 13_circARID1B Other 1 2019-02-16 OEZ004365 14_circCNN2 Other 1 2019-02-16 OEZ004366 15_circDHX34 Other 1 2019-02-16 OEZ004367 16_circFKBP8 Other 1 2019-02-16 OEZ004368 17_circKIAA0368 Other 1 2019-02-16 OEZ004369 18_circMBOAT2 Other 1 2019-02-16 OEZ004370 19_circPIP5K1C Other 1 2019-02-16 OEZ004371 20_circPPP1CB Other 1 2019-02-16 OEZ004372 21_circPROSC Other 1 2019-02-16 OEZ004373 22_circPTK2 Other 1 2019-02-16 OEZ004374 23_circSLC22A23 Other 1 2019-02-16 OEZ004375 24_circSNHG4 Other 1 2019-02-16 OEZ004376 25_circTMEM181 Other 1 2019-02-16 OEZ004377 26_circVAPB Other 1 2019-02-16 OEZ004378 27_circASAP1 Other 1 2019-02-16 OEZ004379 28_circASXL1 Other 1 2019-02-16 OEZ004380 29_circDYNC1H1 Other 1 2019-02-16 OEZ004381 30_circFGFR1_2 Other 1 2019-02-16 OEZ004382 31_circLDLRAD3 Other 1 2019-02-16 OEZ004383 32_circPHF21A Other 1 2019-02-16 OEZ004384 33_circRTN4 Other 1 2019-02-16 OEZ004385 34_circSMARCA5 Other 1 2019-02-16
Author Information
- Create Date
- 2019-01-19
- Last Modified
- 2019-04-26
- Submission
- Li Yang
- CAS-MPG Partner Institute for Computational Biology