General Information
Project ID
OEP004094
Project Name
Integrative multi-Omics analysis depicts the methylome and hydroxymethylome of recurrent bladder cancers and identifies biomarkers for predicting PD-L1 expression
Description
Urinary bladder cancer (UBC) is one of the most common malignancies of the urinary tract; however, the mechanism of its high recurrence and responses to immunotherapy remains unclear, resulting in difficulties in clinical outcome prediction. Epigenetic alterations, especially DNA methylation, play important roles in bladder cancer development and are increasingly investigated as biomarkers for diagnostic or prognostic predictions. However, little is known regarding hydroxymethylation since previous studies based on bisulfite-sequencing approaches could not differentiate between 5mC and 5hmC signals, resulting in entangled methylation results. Here, we used a multi-omics approach to provide the genome, transcriptome, methylome, and hydroxymethylome landscape of both primary and recurrent bladder cancers.
Project information
Experiments
2
Experiment ID
Experiment name
Experiment type
Create Date
OEX023008
UBC RRBS
Genomic
2023-04-05
OEX023009
UBC oxRRBS
Genomic
2023-04-05
Samples
54
Sample ID
Sample Name
Sample Subject Type
Organism
Tissue
Create Date
OES304342
BL-A14
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304343
CYY-A22
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304344
DSS-A54
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304345
GJQ-A37
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304346
HCG-A6
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304347
JCA-A44
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304348
JFM-A25
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304349
JFM-AP25
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304350
JMK-A11
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304351
KLJ-A2
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304352
KLJ-AP2
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304353
LGR-A46
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304354
LHG-A34
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304355
LJY-A58
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304356
LSH-A59
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304357
LSH-AP59
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304358
LWZ-A1
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304359
LWZ-AP1
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304360
LXP-A43
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304361
LXP-AP43
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304362
LY-A52
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304363
LYF-A56
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304364
LYX-A12
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304365
LYX-AP12
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304366
MDZ-A21
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304367
MLP-A39
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304368
MQM-A18
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304369
MZY-A4
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304370
MZY-AP4
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304371
SGC-A53
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304372
SJW-A9
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304373
SWH-A10
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304374
SYX-A30
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304375
SYX-A32
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304376
SYX-AP30
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304377
SYX-AP32
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304378
WCL-A57
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304379
WDY-A35
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304380
WGM-A40
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304381
WJ-A5
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304382
WYH-A48
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304383
WZX-A41
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304384
WZX-AP41
Human
Homo sapiens
paracancerous tissue
2023-04-05
OES304385
XCF-A27
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304386
YKK-A3
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304387
YKW-A17
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304388
YW-A55
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304389
YXH-A33
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304390
YYX-A36
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304391
ZLS-A20
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304392
ZMH-A7
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304393
ZXM-A19
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304394
ZXM-A28
Human
Homo sapiens
bladder cancer tissue
2023-04-05
OES304395
ZZT-A42
Human
Homo sapiens
bladder cancer tissue
2023-04-05
Runs
108
Run ID
Run Name
Experiment
Sample
Data Num
Create Date
OER393632
BL-A14_RRBS
OEX023008
OES304342
2
2023-04-05
OER393633
CYY-A22_RRBS
OEX023008
OES304343
2
2023-04-05
OER393634
DSS-A54_RRBS
OEX023008
OES304344
2
2023-04-05
OER393635
GJQ-A37_RRBS
OEX023008
OES304345
2
2023-04-05
OER393636
HCG-A6_RRBS
OEX023008
OES304346
2
2023-04-05
OER393637
JCA-A44_RRBS
OEX023008
OES304347
2
2023-04-05
OER393638
JFM-A25_RRBS
OEX023008
OES304348
2
2023-04-05
OER393639
JFM-AP25_RRBS
OEX023008
OES304349
2
2023-04-05
OER393640
JMK-A11_RRBS
OEX023008
OES304350
2
2023-04-05
OER393641
KLJ-A2_RRBS
OEX023008
OES304351
2
2023-04-05
OER393642
KLJ-AP2_RRBS
OEX023008
OES304352
2
2023-04-05
OER393643
LGR-A46_RRBS
OEX023008
OES304353
2
2023-04-05
OER393644
LHG-A34_RRBS
OEX023008
OES304354
2
2023-04-05
OER393645
LJY-A58_RRBS
OEX023008
OES304355
2
2023-04-05
OER393646
LSH-A59_RRBS
OEX023008
OES304356
2
2023-04-05
OER393647
LSH-AP59_RRBS
OEX023008
OES304357
2
2023-04-05
OER393648
LWZ-A1_RRBS
OEX023008
OES304358
2
2023-04-05
OER393649
LWZ-AP1_RRBS
OEX023008
OES304359
2
2023-04-05
OER393650
LXP-A43_RRBS
OEX023008
OES304360
2
2023-04-05
OER393651
LXP-AP43_RRBS
OEX023008
OES304361
2
2023-04-05
OER393652
LY-A52_RRBS
OEX023008
OES304362
2
2023-04-05
OER393653
LYF-A56_RRBS
OEX023008
OES304363
2
2023-04-05
OER393654
LYX-A12_RRBS
OEX023008
OES304364
2
2023-04-05
OER393655
LYX-AP12_RRBS
OEX023008
OES304365
2
2023-04-05
OER393656
MDZ-A21_RRBS
OEX023008
OES304366
2
2023-04-05
OER393657
MLP-A39_RRBS
OEX023008
OES304367
2
2023-04-05
OER393658
MQM-A18_RRBS
OEX023008
OES304368
2
2023-04-05
OER393659
MZY-A4_RRBS
OEX023008
OES304369
2
2023-04-05
OER393660
MZY-AP4_RRBS
OEX023008
OES304370
2
2023-04-05
OER393661
SGC-A53_RRBS
OEX023008
OES304371
2
2023-04-05
OER393662
SJW-A9_RRBS
OEX023008
OES304372
2
2023-04-05
OER393663
SWH-A10_RRBS
OEX023008
OES304373
2
2023-04-05
OER393664
SYX-A30_RRBS
OEX023008
OES304374
2
2023-04-05
OER393665
SYX-A32_RRBS
OEX023008
OES304375
2
2023-04-05
OER393666
SYX-AP30_RRBS
OEX023008
OES304376
2
2023-04-05
OER393667
SYX-AP32_RRBS
OEX023008
OES304377
2
2023-04-05
OER393668
WCL-A57_RRBS
OEX023008
OES304378
2
2023-04-05
OER393669
WDY-A35_RRBS
OEX023008
OES304379
2
2023-04-05
OER393670
WGM-A40_RRBS
OEX023008
OES304380
2
2023-04-05
OER393671
WJ-A5_RRBS
OEX023008
OES304381
2
2023-04-05
OER393672
WYH-A48_RRBS
OEX023008
OES304382
2
2023-04-05
OER393673
WZX-A41_RRBS
OEX023008
OES304383
2
2023-04-05
OER393674
WZX-AP41_RRBS
OEX023008
OES304384
2
2023-04-05
OER393675
XCF-A27_RRBS
OEX023008
OES304385
2
2023-04-05
OER393676
YKK-A3_RRBS
OEX023008
OES304386
2
2023-04-05
OER393677
YKW-A17_RRBS
OEX023008
OES304387
2
2023-04-05
OER393678
YW-A55_RRBS
OEX023008
OES304388
2
2023-04-05
OER393679
YXH-A33_RRBS
OEX023008
OES304389
2
2023-04-05
OER393680
YYX-A36_RRBS
OEX023008
OES304390
2
2023-04-05
OER393681
ZLS-A20_RRBS
OEX023008
OES304391
2
2023-04-05
OER393682
ZMH-A7_RRBS
OEX023008
OES304392
2
2023-04-05
OER393683
ZXM-A19_RRBS
OEX023008
OES304393
2
2023-04-05
OER393684
ZXM-A28_RRBS
OEX023008
OES304394
2
2023-04-05
OER393685
ZZT-A42_RRBS
OEX023008
OES304395
2
2023-04-05
OER393686
BL-A14_oxRRBS
OEX023009
OES304342
2
2023-04-05
OER393687
CYY-A22_oxRRBS
OEX023009
OES304343
2
2023-04-05
OER393688
DSS-A54_oxRRBS
OEX023009
OES304344
2
2023-04-05
OER393689
GJQ-A37_oxRRBS
OEX023009
OES304345
2
2023-04-05
OER393690
HCG-A6_oxRRBS
OEX023009
OES304346
2
2023-04-05
OER393691
JCA-A44_oxRRBS
OEX023009
OES304347
2
2023-04-05
OER393692
JFM-A25_oxRRBS
OEX023009
OES304348
2
2023-04-05
OER393693
JFM-AP25_oxRRBS
OEX023009
OES304349
2
2023-04-05
OER393694
JMK-A11_oxRRBS
OEX023009
OES304350
2
2023-04-05
OER393695
KLJ-A2_oxRRBS
OEX023009
OES304351
2
2023-04-05
OER393696
KLJ-AP2_oxRRBS
OEX023009
OES304352
2
2023-04-05
OER393697
LGR-A46_oxRRBS
OEX023009
OES304353
2
2023-04-05
OER393698
LHG-A34_oxRRBS
OEX023009
OES304354
2
2023-04-05
OER393699
LJY-A58_oxRRBS
OEX023009
OES304355
2
2023-04-05
OER393700
LSH-A59_oxRRBS
OEX023009
OES304356
2
2023-04-05
OER393701
LSH-AP59_oxRRBS
OEX023009
OES304357
2
2023-04-05
OER393702
LWZ-A1_oxRRBS
OEX023009
OES304358
2
2023-04-05
OER393703
LWZ-AP1_oxRRBS
OEX023009
OES304359
2
2023-04-05
OER393704
LXP-A43_oxRRBS
OEX023009
OES304360
2
2023-04-05
OER393705
LXP-AP43_oxRRBS
OEX023009
OES304361
2
2023-04-05
OER393706
LY-A52_oxRRBS
OEX023009
OES304362
2
2023-04-05
OER393707
LYF-A56_oxRRBS
OEX023009
OES304363
2
2023-04-05
OER393708
LYX-A12_oxRRBS
OEX023009
OES304364
2
2023-04-05
OER393709
LYX-AP12_oxRRBS
OEX023009
OES304365
2
2023-04-05
OER393710
MDZ-A21_oxRRBS
OEX023009
OES304366
2
2023-04-05
OER393711
MLP-A39_oxRRBS
OEX023009
OES304367
2
2023-04-05
OER393712
MQM-A18_oxRRBS
OEX023009
OES304368
2
2023-04-05
OER393713
MZY-A4_oxRRBS
OEX023009
OES304369
2
2023-04-05
OER393714
MZY-AP4_oxRRBS
OEX023009
OES304370
2
2023-04-05
OER393715
SGC-A53_oxRRBS
OEX023009
OES304371
2
2023-04-05
OER393716
SJW-A9_oxRRBS
OEX023009
OES304372
2
2023-04-05
OER393717
SWH-A10_oxRRBS
OEX023009
OES304373
2
2023-04-05
OER393718
SYX-A30_oxRRBS
OEX023009
OES304374
2
2023-04-05
OER393719
SYX-A32_oxRRBS
OEX023009
OES304375
2
2023-04-05
OER393720
SYX-AP30_oxRRBS
OEX023009
OES304376
2
2023-04-05
OER393721
SYX-AP32_oxRRBS
OEX023009
OES304377
2
2023-04-05
OER393722
WCL-A57_oxRRBS
OEX023009
OES304378
2
2023-04-05
OER393723
WDY-A35_oxRRBS
OEX023009
OES304379
2
2023-04-05
OER393724
WGM-A40_oxRRBS
OEX023009
OES304380
2
2023-04-05
OER393725
WJ-A5_oxRRBS
OEX023009
OES304381
2
2023-04-05
OER393726
WYH-A48_oxRRBS
OEX023009
OES304382
2
2023-04-05
OER393727
WZX-A41_oxRRBS
OEX023009
OES304383
2
2023-04-05
OER393728
WZX-AP41_oxRRBS
OEX023009
OES304384
2
2023-04-05
OER393729
XCF-A27_oxRRBS
OEX023009
OES304385
2
2023-04-05
OER393730
YKK-A3_oxRRBS
OEX023009
OES304386
2
2023-04-05
OER393731
YKW-A17_oxRRBS
OEX023009
OES304387
2
2023-04-05
OER393732
YW-A55_oxRRBS
OEX023009
OES304388
2
2023-04-05
OER393733
YXH-A33_oxRRBS
OEX023009
OES304389
2
2023-04-05
OER393734
YYX-A36_oxRRBS
OEX023009
OES304390
2
2023-04-05
OER393735
ZLS-A20_oxRRBS
OEX023009
OES304391
2
2023-04-05
OER393736
ZMH-A7_oxRRBS
OEX023009
OES304392
2
2023-04-05
OER393737
ZXM-A19_oxRRBS
OEX023009
OES304393
2
2023-04-05
OER393738
ZXM-A28_oxRRBS
OEX023009
OES304394
2
2023-04-05
OER393739
ZZT-A42_oxRRBS
OEX023009
OES304395
2
2023-04-05
Author Information
Create Date
2023-04-05
Last Modified
2023-05-08
Submission
Zhen-Duo Shi
Xuzhou Clinical School of Xuzhou Medical University