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  • PROJ Metabolic characterization of sphere-derived prostate cancer stem cells

    Yuanyuan Luo, Dalian institute of chemical physics,2023.03.27

    Description

    Alteration of cell metabolism is one of the essential characteristics of tumor growth. Cancer stem cells (CSCs) are the initiating cells of tumorigenesis, proliferation, recurrence, and other processes, and play an important role in therapeutic resistance and metastasis. Thus, identification of the metabolic profiles in prostate cancer stem cells (PCSCs) is critical to understanding prostate cancer progression. Here, using untargeted metabolomics and lipidomics methods, we showed distinct metabolic differences between prostate cancer cells and PCSCs. We obtained DU145 spheres by ultralow-attached culture in sphere conditional medium. We use serum-induced sphere (adherent state) as control (Adh), and generation 2 (G2) and generation 3 (G3) of spheres as experimental groups to study the metabolic changes between prostate cancer cells and cancer stem cells.

    OEP004085

  • PROJ Single-cell Atlas of goat IVD

    Jian He, Army Medical University,2023.01.08

    Description

    scRNA-seq datasets of goat IVDs, including nucleus pulposus (NP), cartilage endplate (CEP), inner annulus fibrosus (iAF), outer annulus fibrosus (oAF).

    OEP003834

  • PROJ Genetic analysis of Wakhi population

    Xiaoxi Zhang, ,2023.03.27

    Description

    Previously, Wakhi population were rarely analyzed. Here, we used 8 Wakhi samples to study.

    OEP004083

  • PROJ Filamentous electroactive bacterium Lysinibacillus varians GY32 promotes sulfate reduction and vertical homogenization of sediments

    Meiying Xu, Guangdong Institute of Microbiology,2023.03.27

    Description

    The sediment collected from a black odorous river in the Dongbo community (Zhongtang town, Dongguan) was incubated in sediment microbial fuel cells in the laboratory. The response of microbial communities to the introduction of Lysinibacillus varians GY32 was investigated.

    OEP004082

  • PROJ Molecular mechanisms of the anaerobic reduction of iron and azo by Shewanella decolorationis S12

    Meiying Xu, Guangdong Institute of Microbiology,2020.11.22

    Description

    The transcriptomic profiles of Shewanella decolorationis S12 in the anaerobic reduction processes of iron and azo were detected and analysed to find out the key genes and explore the molecular mechanisms.

    OEP001308

  • PROJ Effects of microbial fuel cell (MFC) on microbial community in river sediment

    Meiying Xu, Guangdong Institute of Microbiology,2020.11.22

    Description

    Effects of microbial fuel cell (MFC) on microbial community in the sediment of Pearl River Estuary were detected to illustrate the roles of MFC in environmental remediation

    OEP001307

  • PROJ The promoting effects of flavins (RF and FMN) on the extracellular electron transfer of Shewanella decolorationis S12 in microbial fuel cells

    Meiying Xu, Guangdong Institute of Microbiology,2020.11.22

    Description

    The transcriptomic profiles of Shewanella decolorationis S12 in microbial fuel cells added with flavins (RF and FMN) were detected and analysed to explore the promoting effects and molecular mechanisms of flavins on the extracellular electron transfer processes.

    OEP001309

  • PROJ Metagenomic analysis on Mangrove Sediment using Illumina

    Zhi-Feng Zhang, ,2023.03.22

    Description

    Metagenomic analysis on Futian Mangrove Sediment by lllumina sequencing.

    OEP004054

  • PROJ Metagenomic analysis on Mangrove Sediment using PacBio

    Zhi-Feng Zhang, Shenzhen University,2023.03.22

    Description

    Metagenomic analysis on Futian Mangrove Sediment by PacBio SMRT sequencing.

    OEP004055

  • PROJ Simultaneously spatiotemporal gene expression and chromatin accessibility for mouse brain development

    Fuqing Jiang, Bioland Lab,2022.04.09

    Description

    Brain are complex biological tissues which function relies on coordinated anatomical and molecular structure comprised by a large number of specialized cells. The spatial architecture of brain which is key to the understanding of its physiological and pathological significance is formed during embryo development. However, the molecular basis for discrete neuroanatomical domains particularly in the context of spatial organization of the brain is inadequate. Here, we introduced microfluidic indexing based spatial ATAC and RNA sequencing (MISAR-seq), a method for parallel profiling of gene expression and chromatin accessibility with spatial information retained in developing mouse brain. Our study has established a direct means to spatially determine the coordination between chromatin accessibility and transcriptome, identified the chromatin potential to define cell fate determination of brain structure, and uncovered spatiotemporal regulatory principles during mammalian brain development.

    OEP003285