National Omics Data Encyclopedia

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General Information

Sample information

Organism

Homo sapiens

Tissue

breast

ATTRIBUTES

age_at_surgery	43	gender	female
dis_mol_type	mRNA_subtype:MES,iCluster_subtype:iC9,SNF_Subtype:SC8	dis_phenotype	Intrinsic_Subtype:Basal
karyo_type	CNA_Subtype:Chr20q13_amp

Projects

1

Project ID	Project name	Submitter	Date
OEP000155	Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies.	Ma, Ding	2018-08-10

Experiments

7

Experiment ID	Experiment name	Experiment type	Experiment protocol	Date
OEX001582	RNAseq	Transcriptomic	RNA library preparation was performed as described in the Illumina TruSeq Stranded Total RNA LT sample preparation kit with Ribo-Zero Gold (Illumina Inc., San Diego, CA, USA).	2019-01-29
OEX001583	WES	Genomic	N/A	2019-01-29
OEX001584	OncoScan Array	Microarray	Genome-wide copy number analysis was performed using an OncoScan CNV Assay Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s recommendations.	2019-01-29
OEX015784	Lipidomics_positive	Metabolomic	N/A	2022-01-28
OEX015785	Lipidomics_negative	Metabolomic	N/A	2022-01-28
OEX015786	Untargeted polar metabolomics_positive	Metabolomic	N/A	2022-01-28
OEX015787	Untargeted polar metabolomics_negative	Metabolomic	N/A	2022-01-28

Runs

10

Run ID	Run Name	Project	Experiment	Sample	Data	Date
OER025916	Lib_FUSCCTNBC034_tumor	OEP000155	OEX001582	OES014499	2	2019-01-29
OER026274	Lib_FUSCCTNBC034_tumor_WES	OEP000155	OEX001583	OES014499	2	2019-01-29
OER026550	Lib_FUSCCTNBC034.peripheral-blood_WES	OEP000155	OEX001583	OES014499	2	2019-01-29
OER027066	FUSCCTNBC034_tumor	OEP000155	OEX001584	OES014499	2	2019-01-29
OER242535	FUSCCTNBC034_LIP_tumor_POS.wiff	OEP000155	OEX015784	OES014499	1	2022-01-28
OER243014	FUSCCTNBC034_LIP_tumor_NEG.wiff	OEP000155	OEX015785	OES014499	1	2022-01-28
OER243493	FUSCCTNBC034_LIP_tumor_POS.wiff.scan	OEP000155	OEX015784	OES014499	1	2022-01-28
OER243972	FUSCCTNBC034_LIP_tumor_NEG.wiff.scan	OEP000155	OEX015785	OES014499	1	2022-01-28
OER244453	FUSCCTNBC034_POL_tumor_POS.d.tar.gz	OEP000155	OEX015786	OES014499	1	2022-01-29
OER244932	FUSCCTNBC034_POL_tumor_NEG.d.tar.gz	OEP000155	OEX015787	OES014499	1	2022-01-29

Author Information