National Omics Data Encyclopedia

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General Information

Sample information

Organism

Homo sapiens

Tissue

breast

ATTRIBUTES

age_at_surgery	44	gender	female
dis_mol_type	mRNA_subtype:BLIS,iCluster_subtype:iC5,SNF_Subtype:SC9	dis_phenotype	Intrinsic_Subtype:Basal
karyo_type	CNA_Subtype:Low_CIN

Projects

1

Project ID	Project name	Submitter	Date
OEP000155	Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies.	Ma, Ding	2018-08-10

Experiments

7

Experiment ID	Experiment name	Experiment type	Experiment protocol	Date
OEX001582	RNAseq	Transcriptomic	RNA library preparation was performed as described in the Illumina TruSeq Stranded Total RNA LT sample preparation kit with Ribo-Zero Gold (Illumina Inc., San Diego, CA, USA).	2019-01-29
OEX001583	WES	Genomic	N/A	2019-01-29
OEX001584	OncoScan Array	Microarray	Genome-wide copy number analysis was performed using an OncoScan CNV Assay Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s recommendations.	2019-01-29
OEX015784	Lipidomics_positive	Metabolomic	N/A	2022-01-28
OEX015785	Lipidomics_negative	Metabolomic	N/A	2022-01-28
OEX015786	Untargeted polar metabolomics_positive	Metabolomic	N/A	2022-01-28
OEX015787	Untargeted polar metabolomics_negative	Metabolomic	N/A	2022-01-28

Runs

11

Run ID	Run Name	Project	Experiment	Sample	Data	Date
OER025990	Lib_FUSCCTNBC262_tumor	OEP000155	OEX001582	OES014573	2	2019-01-29
OER026406	Lib_FUSCCTNBC262_tumor_WES	OEP000155	OEX001583	OES014573	2	2019-01-29
OER026683	Lib_FUSCCTNBC262.peripheral-blood_WES	OEP000155	OEX001583	OES014573	2	2019-01-29
OER026974	FUSCCTNBC262_tumor	OEP000155	OEX001584	OES014573	2	2019-01-29
OER027020	FUSCCTNBC262.peripheral-blood	OEP000155	OEX001584	OES014573	2	2019-01-29
OER242752	FUSCCTNBC262_LIP_tumor_POS.wiff	OEP000155	OEX015784	OES014573	1	2022-01-28
OER243231	FUSCCTNBC262_LIP_tumor_NEG.wiff	OEP000155	OEX015785	OES014573	1	2022-01-28
OER243710	FUSCCTNBC262_LIP_tumor_POS.wiff.scan	OEP000155	OEX015784	OES014573	1	2022-01-28
OER244189	FUSCCTNBC262_LIP_tumor_NEG.wiff.scan	OEP000155	OEX015785	OES014573	1	2022-01-28
OER244670	FUSCCTNBC262_POL_tumor_POS.d.tar.gz	OEP000155	OEX015786	OES014573	1	2022-01-29
OER245149	FUSCCTNBC262_POL_tumor_NEG.d.tar.gz	OEP000155	OEX015787	OES014573	1	2022-01-29

Author Information