National Omics Data Encyclopedia

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General Information

Sample information

Organism

Homo sapiens

Tissue

breast

ATTRIBUTES

age_at_surgery	48	gender	female
dis_mol_type	mRNA_subtype:BLIS,iCluster_subtype:iC7,SNF_Subtype:SC2	dis_phenotype	Intrinsic_Subtype:Basal
karyo_type	CNA_Subtype:Low_CIN

Projects

1

Project ID	Project name	Submitter	Date
OEP000155	Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies.	Ma, Ding	2018-08-10

Experiments

7

Experiment ID	Experiment name	Experiment type	Experiment protocol	Date
OEX001582	RNAseq	Transcriptomic	RNA library preparation was performed as described in the Illumina TruSeq Stranded Total RNA LT sample preparation kit with Ribo-Zero Gold (Illumina Inc., San Diego, CA, USA).	2019-01-29
OEX001583	WES	Genomic	N/A	2019-01-29
OEX001584	OncoScan Array	Microarray	Genome-wide copy number analysis was performed using an OncoScan CNV Assay Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s recommendations.	2019-01-29
OEX015784	Lipidomics_positive	Metabolomic	N/A	2022-01-28
OEX015785	Lipidomics_negative	Metabolomic	N/A	2022-01-28
OEX015786	Untargeted polar metabolomics_positive	Metabolomic	N/A	2022-01-28
OEX015787	Untargeted polar metabolomics_negative	Metabolomic	N/A	2022-01-28

Runs

17

Run ID	Run Name	Project	Experiment	Sample	Data	Date
OER025999	Lib_FUSCCTNBC296_tumor	OEP000155	OEX001582	OES014582	2	2019-01-29
OER026427	Lib_FUSCCTNBC296_tumor_WES	OEP000155	OEX001583	OES014582	2	2019-01-29
OER026704	Lib_FUSCCTNBC296.peripheral-blood_WES	OEP000155	OEX001583	OES014582	2	2019-01-29
OER027027	FUSCCTNBC296_tumor	OEP000155	OEX001584	OES014582	2	2019-01-29
OER027102	FUSCCTNBC296.peripheral-blood	OEP000155	OEX001584	OES014582	2	2019-01-29
OER242759	FUSCCTNBC296_LIP_tumor_POS.wiff	OEP000155	OEX015784	OES014582	1	2022-01-28
OER242858	FUSCCTNBC296_LIP_normal_POS.wiff	OEP000155	OEX015784	OES014582	1	2022-01-28
OER243238	FUSCCTNBC296_LIP_tumor_NEG.wiff	OEP000155	OEX015785	OES014582	1	2022-01-28
OER243337	FUSCCTNBC296_LIP_normal_NEG.wiff	OEP000155	OEX015785	OES014582	1	2022-01-28
OER243717	FUSCCTNBC296_LIP_tumor_POS.wiff.scan	OEP000155	OEX015784	OES014582	1	2022-01-28
OER243816	FUSCCTNBC296_LIP_normal_POS.wiff.scan	OEP000155	OEX015784	OES014582	1	2022-01-28
OER244196	FUSCCTNBC296_LIP_tumor_NEG.wiff.scan	OEP000155	OEX015785	OES014582	1	2022-01-28
OER244295	FUSCCTNBC296_LIP_normal_NEG.wiff.scan	OEP000155	OEX015785	OES014582	1	2022-01-28
OER244677	FUSCCTNBC296_POL_tumor_POS.d.tar.gz	OEP000155	OEX015786	OES014582	1	2022-01-29
OER244776	FUSCCTNBC296_POL_normal_POS.d.tar.gz	OEP000155	OEX015786	OES014582	1	2022-01-29
OER245156	FUSCCTNBC296_POL_tumor_NEG.d.tar.gz	OEP000155	OEX015787	OES014582	1	2022-01-29
OER245255	FUSCCTNBC296_POL_normal_NEG.d.tar.gz	OEP000155	OEX015787	OES014582	1	2022-01-29

Author Information