National Omics Data Encyclopedia

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General Information

Sample information

Organism

Homo sapiens

Tissue

breast

ATTRIBUTES

age_at_surgery	54	gender	female
dis_mol_type	mRNA_subtype:BLIS,iCluster_subtype:iC1,SNF_Subtype:SC1	dis_phenotype	Intrinsic_Subtype:Basal
karyo_type	CNA_Subtype:Chr9p23_amp

Projects

1

Project ID	Project name	Submitter	Date
OEP000155	Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies.	Ma, Ding	2018-08-10

Experiments

7

Experiment ID	Experiment name	Experiment type	Experiment protocol	Date
OEX001582	RNAseq	Transcriptomic	RNA library preparation was performed as described in the Illumina TruSeq Stranded Total RNA LT sample preparation kit with Ribo-Zero Gold (Illumina Inc., San Diego, CA, USA).	2019-01-29
OEX001583	WES	Genomic	N/A	2019-01-29
OEX001584	OncoScan Array	Microarray	Genome-wide copy number analysis was performed using an OncoScan CNV Assay Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s recommendations.	2019-01-29
OEX015784	Lipidomics_positive	Metabolomic	N/A	2022-01-28
OEX015785	Lipidomics_negative	Metabolomic	N/A	2022-01-28
OEX015786	Untargeted polar metabolomics_positive	Metabolomic	N/A	2022-01-28
OEX015787	Untargeted polar metabolomics_negative	Metabolomic	N/A	2022-01-28

Runs

16

Run ID	Run Name	Project	Experiment	Sample	Data	Date
OER026123	Lib_FUSCCTNBC438_tumor	OEP000155	OEX001582	OES014697	2	2019-01-29
OER026502	Lib_FUSCCTNBC438_tumor_WES	OEP000155	OEX001583	OES014697	2	2019-01-29
OER026779	Lib_FUSCCTNBC438.peripheral-blood_WES	OEP000155	OEX001583	OES014697	2	2019-01-29
OER026959	FUSCCTNBC438_tumor	OEP000155	OEX001584	OES014697	2	2019-01-29
OER242784	FUSCCTNBC438_LIP_tumor_POS.wiff	OEP000155	OEX015784	OES014697	1	2022-01-28
OER242894	FUSCCTNBC438_LIP_normal_POS.wiff	OEP000155	OEX015784	OES014697	1	2022-01-28
OER243263	FUSCCTNBC438_LIP_tumor_NEG.wiff	OEP000155	OEX015785	OES014697	1	2022-01-28
OER243373	FUSCCTNBC438_LIP_normal_NEG.wiff	OEP000155	OEX015785	OES014697	1	2022-01-28
OER243742	FUSCCTNBC438_LIP_tumor_POS.wiff.scan	OEP000155	OEX015784	OES014697	1	2022-01-28
OER243852	FUSCCTNBC438_LIP_normal_POS.wiff.scan	OEP000155	OEX015784	OES014697	1	2022-01-28
OER244221	FUSCCTNBC438_LIP_tumor_NEG.wiff.scan	OEP000155	OEX015785	OES014697	1	2022-01-28
OER244331	FUSCCTNBC438_LIP_normal_NEG.wiff.scan	OEP000155	OEX015785	OES014697	1	2022-01-28
OER244702	FUSCCTNBC438_POL_tumor_POS.d.tar.gz	OEP000155	OEX015786	OES014697	1	2022-01-29
OER244812	FUSCCTNBC438_POL_normal_POS.d.tar.gz	OEP000155	OEX015786	OES014697	1	2022-01-29
OER245181	FUSCCTNBC438_POL_tumor_NEG.d.tar.gz	OEP000155	OEX015787	OES014697	1	2022-01-29
OER245291	FUSCCTNBC438_POL_normal_NEG.d.tar.gz	OEP000155	OEX015787	OES014697	1	2022-01-29

Author Information