TransCirc

CircID: TC-hsa-PMP22_0005

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr17:15259094~15260761

Gene:

PMP22

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-PMP22_0004
circBase: hsa_circ_0042123
deepbase2: hsa-circRNA11352
circpedia2: HSA_CIRCpedia_19329

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 2.78314 MS Q-Value:
ORF	1.0
IRES sequence	0.01763
Translation initiation site	1.0
SeqComp	0.76551
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GCAGAAACTCCGCTGAGCAGAACTTGCCGCCAGAATGCTCCTCCTGTTGCTGAGTATCATCGTCCTCCACGTCGCGGTGCTGGTGCTGCTGTTCGTCTCCACGATCGTCAGCCAATGGATCGTGGGCAATGGACACGCAACTGATCTCTGGCAGAACTGTAGCACCTCTTCCTCAGGAAATGTCCACCACTGTTTCTCATCATCACCAAACG

Exons

exon1:15260761~15260650
exon2:15259193~15259094

IRES sequence

15259167~15259162

Translation initiation site

15260727~15260725

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 35
Stop: 53
Length: 231
Translation cycles: 1

ATGCTCCTCCTGTTGCTGAGTATCATCGTCCTCCACGTCGCGGTGCTGGTGCTGCTGTTCGTCTCCACGATCGTCAGCCAATGGATCGTGGGCAATGGACACGCAACTGATCTCTGGCAGAACTGTAGCACCTCTTCCTCAGGAAATGTCCACCACTGTTTCTCATCATCACCAAACGGCAGAAACTCCGCTGAGCAGAACTTGCCGCCAGAATGCTCCTCCTGTTGCTGA

MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNGRNSAEQNLPPECSSCC*

Start: 129
Stop: 144
Length: 228
Translation cycles: 1

ATGGACACGCAACTGATCTCTGGCAGAACTGTAGCACCTCTTCCTCAGGAAATGTCCACCACTGTTTCTCATCATCACCAAACGGCAGAAACTCCGCTGAGCAGAACTTGCCGCCAGAATGCTCCTCCTGTTGCTGAGTATCATCGTCCTCCACGTCGCGGTGCTGGTGCTGCTGTTCGTCTCCACGATCGTCAGCCAATGGATCGTGGGCAATGGACACGCAACTGA

MDTQLISGRTVAPLPQEMSTTVSHHHQTAETPLSRTCRQNAPPVAEYHRPPRRGAGAAVRLHDRQPMDRGQWTRN*