TransCirc

CircID: TC-hsa-SMARCC1_0030

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr3:47635190~47638780

Gene:

SMARCC1

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-SMARCC1_0004
circRNADb: hsa_circ_19457
circpedia2: HSA_CIRCpedia_114202

Evidences

Ribosome/polysome profiling	0.33333	Evidence score: 2.711147 MS Q-Value:
ORF	1.0
IRES sequence	0.37781
Translation initiation site	0.0
SeqComp	1.0
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

AAGGAGCTGAAGAGGAAAAAATGGAAGCCGACCCTGATGGTCAGCAGCCTGAAAAGGCAGAAAATAAAGTGGAAAATGAAACGGATGAAGGTGATAAAGCACAAGATGGAGAAAATGAAAAAAATAGTGAAAAGGAACAGGATAGTGAAGTGAGTGAGGATACCAAATCAGAAGAAAAGGAGACTGAAGAGAACAAAGAACTCACTGATACATGTAAAGAAAGAGAAAGTGATACTGGGAAGAAGAAAGTAGAACATGAAATTTCCGAAGGAAATGTTGCCACAGCCGCAGCAGCTGCTCTTGCCTCAGCGGCTACCAAAGCCAAG

Exons

exon1:47638780~47638725
exon2:47636136~47636022
exon3:47635344~47635190

IRES sequence

47638765~47638759
47636132~47636124
47636099~47636094
47636075~47636067
47636023~47635340
47635284~47635279
47635277~47635269
47635192~47638778

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 256
Stop: 10
Length: 81
Translation cycles: 1

ATGAAATTTCCGAAGGAAATGTTGCCACAGCCGCAGCAGCTGCTCTTGCCTCAGCGGCTACCAAAGCCAAGAAGGAGCTGA

MKFPKEMLPQPQQLLLPQRLPKPRRS*

Start: 21
Stop: 153
Length: 459
Translation cycles: 1

ATGGAAGCCGACCCTGATGGTCAGCAGCCTGAAAAGGCAGAAAATAAAGTGGAAAATGAAACGGATGAAGGTGATAAAGCACAAGATGGAGAAAATGAAAAAAATAGTGAAAAGGAACAGGATAGTGAAGTGAGTGAGGATACCAAATCAGAAGAAAAGGAGACTGAAGAGAACAAAGAACTCACTGATACATGTAAAGAAAGAGAAAGTGATACTGGGAAGAAGAAAGTAGAACATGAAATTTCCGAAGGAAATGTTGCCACAGCCGCAGCAGCTGCTCTTGCCTCAGCGGCTACCAAAGCCAAGAAGGAGCTGAAGAGGAAAAAATGGAAGCCGACCCTGATGGTCAGCAGCCTGAAAAGGCAGAAAATAAAGTGGAAAATGAAACGGATGAAGGTGATAAAGCACAAGATGGAGAAAATGAAAAAAATAGTGAAAAGGAACAGGATAGTGAAGTGA

MEADPDGQQPEKAENKVENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKELTDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKKELKRKKWKPTLMVSSLKRQKIKWKMKRMKVIKHKMEKMKKIVKRNRIVK*