Upload & QC
Data check is a module of the function to check whether the input data meet the requirements.
- Data conversion
Plink binary format and VCF format can be uploaded. All uploaded VCF format data will be converted to Plink binary format.
- Calculate the number of variants and samples
The number of variants and sample size in the data uploads are calculated, and some simple summary statistics are provided.
- Basic data quality control
This module will:
a. Extract biallelic SNVs;
b. Check chromosome codes (1-22,X[23), Y[24), XY[25), MT);
c. Remove duplicate variants;
Users can view the processed files in the data summary.