Variant "HFE:c.77-206G>A"
Search results: 4 records
Variant information
Gene:
HFE 
Variant:
HFE:c.77-206G>A 
Genomic location:
chr6:26093141(hg19) 
HGVS:
SO Term RefSeq
protein_coding NM_000410.3:c.845G>A(p.Cys282Tyr)
protein_coding NM_001300749.1:c.845G>A(p.Cys282Tyr)
protein_coding NM_139006.2:c.803G>A(p.Cys268Tyr)
protein_coding NM_139009.2:c.776G>A(p.Cys259Tyr)
protein_coding NM_139007.2:c.581G>A(p.Cys194Tyr)
protein_coding NM_139004.2:c.569G>A(p.Cys190Tyr)
protein_coding NM_139008.2:c.539G>A(p.Cys180Tyr)
protein_coding NM_139003.2:c.527G>A(p.Cys176Tyr)
protein_coding NM_139010.2:c.305G>A(p.Cys102Tyr)
protein_coding NM_139011.2:c.77-206G>A
show all
Alias:
HFE:rs1800562, HFE:c.G845A 
dbSNP ID:
GWAS trait:
Modifier statisitcs
Record:
Disorder:
Reference:
Effect type:
Expressivity(3) ,Penetrance(1)  
Modifier effect:
Altered incidence(1) ,Altered rates of CFRD(1) ,Altered severity(1) ,Risk factor(1)  
Details:
  • Target disease:
    Cystic fibrosis (DOID_1485)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered rates of CFRD 
    Evidence:
    P=0.029 
    Effect:
    C282Y substitutions were associated with increased rates of CFRD (58% versus 33%, p=0.026) and a trend towards increased MI or DIOS (38% versus 19%, p=0.05).
    Alias in reference:
    HFE:rs1800562
    Reference:
    Title:
    Mutations in the HFE gene can be associated with increased lung disease severity in cystic fibrosis.
    Species studied:
    Human
    Abstract:
    Genetic modifiers contribute to variable disease phenotype in cystic fibrosis (CF). We explored the association between mutations in the hemochromatosis (HFE) gene and disease severity in adults with CF.
  • Target disease:
    Hemochromatosis (DOID_2352)
    Effect type:
    Penetrance 
    Modifier effect:
    Altered incidence 
    Evidence:
    Gene activity study 
    Effect:
    Cp and HFE and represents the first example of a modifier gene with a protective effect, in which heterozygosity reduces the iron load in the context of HFE deficiency
    Alias in reference:
    HFE:c.G845A
    Reference:
    Title:
    Genetic study of variation in normal mouse iron homeostasis reveals ceruloplasmin as an HFE-hemochromatosis modifier gene.
    Species studied:
    Human
    Abstract:
    Genetic hemochromatosis is one of the most common genetic disorders, with progressive tissue iron overload leading to severe clinical complications. In Northern European populations, genetic hemochromatosis is usually caused by homozygosity for the C282Y mutation in the HFE protein. However, penetrance of this mutation is incomplete, suggesting that other genetic and environmental factors contribute to its differential biologic or clinical expression.
  • Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    P=2.70×10(-8) 
    Effect:
    Associated with the development NAFLD or disease severity.
    Alias in reference:
    HFE:c.77-206G>A
    Reference:
    Title:
    Genetic analysis of nonalcoholic fatty liver disease within a Caribbean-Hispanic population.
    Species studied:
    Human
    Abstract:
    We explored potential genetic risk factors implicated in nonalcoholic fatty liver disease (NAFLD) within a Caribbean-Hispanic population in New York City. A total of 316 individuals including 40 subjects with biopsy-proven NAFLD, 24 ethnically matched non-NAFLD controls, and a 252 ethnically mixed random sampling of Bronx County, New York were analyzed. Genotype analysis was performed to determine allelic frequencies of 74 known single-nucleotide polymorphisms (SNPs) associated with NAFLD risk based on previous genome-wide association study (GWAS) and candidate gene studies. Additionally, the entire coding region of PNPLA3, a gene showing the strongest association to NAFLD was subjected to Sanger sequencing. Results suggest that both rare and common DNA variations in PNPLA3 and SAMM50 may be correlated with NAFLD in this small population study, while common DNA variations in CHUK and ERLIN1, may have a protective interaction. Common SNPs in ENPP1 and ABCC2 have suggestive association with fatty liver, but with less compelling significance. In conclusion, Hispanic patients of Caribbean ancestry may have different interactions with NAFLD genetic modifiers; therefore, further investigation with a larger sample size, into this Caribbean-Hispanic population is warranted.
  • Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    From review article 
    Effect:
    The presence of the C282Y mutation was a risk factor for development of advanced hepatic fibrosis among US Caucasian patients with NASH
    Alias in reference:
    HFE:rs1800562
    Reference:
    Title:
    Genetic predisposition in NAFLD and NASH: impact on severity of liver disease and response to treatment.
    Species studied:
    Human
    Abstract:
    Liver fat deposition related to systemic insulin resistance defines non-alcoholic fatty liver disease (NAFLD) which, when associated with oxidative hepatocellular damage, inflammation, and activation of fibrogenesis, i.e. non-alcoholic steatohepatitis (NASH), can progress towards cirrhosis and hepatocellular carcinoma. Due to the epidemic of obesity, NAFLD is now the most frequent liver disease and the leading cause of altered liver enzymes in Western countries. Epidemiological, familial, and twin studies provide evidence for an element of heritability of NAFLD. Genetic modifiers of disease severity and progression have been identified through genome-wide association studies. These include the Patatin-like phosholipase domain-containing 3 (PNPLA3) gene variant I148M as a major determinant of inter-individual and ethnicity-related differences in hepatic fat content independent of insulin resistance and serum lipid concentration. Association studies confirm that the I148M polymorphism is also a strong modifier of NASH and progressive hepatic injury. Furthermore, a few large multicentre case-control studies have demonstrated a role for genetic variants implicated in insulin signalling, oxidative stress, and fibrogenesis in the progression of NAFLD towards fibrosing NASH, and confirm that hepatocellular fat accumulation and insulin resistance are key operative mechanisms closely involved in the progression of liver damage. It is now important to explore the molecular mechanisms underlying these associations between gene variants and progressive liver disease, and to evaluate their impact on the response to available therapies. It is hoped that this knowledge will offer further insights into pathogenesis, suggest novel therapeutic targets, and could help guide physicians towards individualised therapy that improves clinical outcome.