Variant "APC:c.3920T>A(p.Ile1307Lys)"
Search results: 2 records
Variant information
Gene:
APC 
Variant:
APC:c.3920T>A(p.Ile1307Lys) 
Genomic location:
chr5:112175211(hg19) 
HGVS:
SO Term RefSeq
protein_coding NM_000038.5:c.3920T>A(p.Ile1307Lys)
protein_coding NM_001127510.2:c.3920T>A(p.Ile1307Lys)
protein_coding NM_001127511.2:c.3866T>A(p.Ile1289Lys)
Alias:
APC:p.I1307K 
dbSNP ID:
GWAS trait:
no data 
Modifier statisitcs
Record:
Disorder:
Reference:
Effect type:
Expressivity(2)  
Modifier effect:
Risk factor(2)  
Details:
  • Target disease:
    Colorectal Cancer (DOID_9256)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    From review article 
    Effect:
    Genetic variants identifed using candidate-gene association studies, signifcantly associated with a risk of colorectal cancer in meta-analyses and showing strong and moderate cumulative evidence of association according to Venice criteria and false-positive report probability tests
    Alias in reference:
    APC:c.3920T>A(p.Ile1307Lys)
    Reference:
    Title:
    Genetic predisposition to colorectal cancer: where we stand and future perspectives.
    Species studied:
    Human
    Abstract:
    The development of colorectal cancer (CRC) can be influenced by genetic factors in both familial cases and sporadic cases. Familial CRC has been associated with genetic changes in high-, moderate- and low-penetrance susceptibility genes. However, despite the availability of current gene-identification techniques, the genetic causes of a considerable proportion of hereditary cases remain unknown. Genome-wide association studies of CRC have identified a number of common low-penetrance alleles associated with a slightly increased or decreased risk of CRC. The accumulation of low-risk variants may partly explain the familial risk of CRC, and some of these variants may modify the risk of cancer in patients with mutations in high-penetrance genes. Understanding the predisposition to develop CRC will require investigators to address the following challenges: the identification of genes that cause uncharacterized hereditary cases of CRC such as familial CRC type X and serrated polyposis; the classification of variants of unknown significance in known CRC-predisposing genes; and the identification of additional cancer risk modifiers that can be used to perform risk assessments for individual mutation carriers. We performed a comprehensive review of the genetically characterized and uncharacterized hereditary CRC syndromes and of low- and moderate-penetrance loci and variants identified through genome-wide association studies and candidate-gene approaches. Current challenges and future perspectives in the field of CRC predisposition are also discussed.
  • Target disease:
    Lynch Syndrome (DOID_3883)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    From review article 
    Effect:
    I1307K polymorphism in the APC gene confers an approximately two-fold elevated risk of CRC by promoting genomic instability and frameshift mutations in the immediate genomic vicinity of codon 1307
    Alias in reference:
    APC:p.I1307K
    Reference:
    Title:
    Phenotypic and genotypic heterogeneity in the Lynch syndrome: diagnostic, surveillance and management implications.
    Species studied:
    Human
    Abstract:
    Lynch syndrome is the most common form of hereditary colorectal cancer (CRC). This review covers the cardinal features of Lynch syndrome with particular emphasis upon its diagnostic criteria, molecular genetics, natural history, genetic counseling, surveillance and management. Considerable attention has been given to the etiologic role of mismatch repair (MMR) genes as well as low penetrance alleles and modifier genes. The American founder mutation, a deletion of exons 1-6 of MSH2, is discussed in some detail, owing to its high frequency in the US (19 000-30 000 carriers). Genetic counseling is essential prior to patients' undergoing DNA testing and again when receiving their test results. Families with a lower incidence of CRC and extracolonic cancers, in the face of being positive for Amsterdam I criteria but who do not have MMR deficiency by tumor testing, are probably not Lynch syndrome, and thereby should preferably be designated as familial CRC of undetermined type. Patients who are either noncompliant or poorly compliant with colonoscopy, and who are MMR mutation positive, may be candidates for prophylactic colectomy, while MMR mutation-positive women who are noncompliant with gynecologic surveillance may be candidates for prophylactic hysterectomy and bilateral salpingo-oophorectomy.