Variant "CEBPE:rs45496295"
Search result: 1 record
Variant information
Gene:
Variant:
CEBPE:rs45496295 
dbSNP ID:
GWAS trait:
no data 
Modifier statisitcs
Record:
Disorder:
Reference:
Effect type:
Expressivity(1)  
Modifier effect:
Altered severity(1)  
Detail:
  • Target disease:
    Beta Thalassemia (DOID_12241)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    Assessment of genotype–phenotype associations 
    Effect:
    The T allele of rs45496295, associated with moderate type of β-thal, seems to modify the C/EBP action, thereby preventing the hemolysis.
    Reference:
    Title:
    First description of the rs45496295 polymorphism of the C/EBPE gene in β-thalassemia intermedia patients
    Species studied:
    Human
    Abstract:
    The C/EBPE gene, located in 14q11.2, encodes for a B/zip-type transcription factor. The C/EBP is involved in terminal differentiation and functional maturity of granulocyte progenitor cells and in cell apoptosis during myeloid differentiation. A C/EBPE gene has recently been described as a candidate gene involved in clinical variability of β-thalassemia (β-thal). In this study, the C/EBPE gene was sequenced in 146 subjects divided into the severe type of β-thal major (β-TM) and moderate type of β-thal intermedia (β-TI), and a control group. The analysis identified the rs45496295 (C>T) polymorphism in the heterozygous state in 73.9% β-TI patients, which was not the case in the β-TM patients or in the control group. Thus, the T allele is consequently associated with the β-TI group (p=10-3). According to the Human Splicing Finder (version 3.0, Marseille, France), the presence of the rs45496295 polymorphism leads the creation of a new intronic exotic splicing enhancer (ESE) site. Moreover, the T allele of rs45496295 is associated with a lower transfusion regimen (p=10-3) and a higher pretransfusion hemoglobin (Hb) rate (p=.006). The comparison of several factors concerning T allele carriers and non-carriers showed that the T allele does not act on the Hb F rate. The T allele of rs45496295, associated with moderate type of β-thal, seems to modify the C/EBP action, thereby preventing the hemolysis.