系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000019
发布时间:
2020-02-29
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Canada/BC_37_0-2/2020
毒株别名:
-
病毒说明:
hCoV-19/Canada/BC_37_0-2/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29782
有效碱基数量:
29512
有效碱基百分比:
99.09%
宿主:
Homo sapiens
宿主补充信息:
History of Travel to Iran
分离来源:
Throat
测序技术:
Nanopore MinIon
组装方法:
ARTIC Network protocol
覆盖度:
500x
相关链接:
EPI_ISL_412965
提交者:
Harrigan, Prystajecky, Krajden, Lee, Kamelian, Lapointe, Choi, Hoang, Sekirov, Levett, Tyson, Loman, Quick, Li, Gilmour
提交者单位:
BCCDC Public Health Laboratory
提交者地址:
655 W 12th Avenue, Vancouver, BC, CANADA
样本信息
编号:
OESV000019
采样时间:
2020-02-16
采样地点:
North America / Canada / British Columbia
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
35
采样单位:
BCCDC Public Health Laboratory
采样地址:
655 W 12th Avenue, Vancouver, BC, CANADA
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020