系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000041
发布时间:
2020-01-23
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Wuhan/WHU01/2020
毒株别名:
-
病毒说明:
hCoV-19/Wuhan/WHU01/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29881
有效碱基数量:
29881
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
BALF sample of 2019 Wuhan peumonia patient 01
测序技术:
Illumina
组装方法:
MEGAHIT v. 2015; DIAMOND v. 2015; MetaPh1An2 v. 2015
覆盖度:
-
相关链接:
EPI_ISL_406716
提交者:
Chen,L., Liu,W., Zhang,Q., Xu,K., Ye,G., Wu,W., Sun,Z., Liu,F., Wu,K., Mei,Y., Zhang,W., Chen,Y., Li,Y., Shi,M., Lan,K. and Liu,Y.
提交者单位:
State Key Laboratory of Virology, Wuhan University
提交者地址:
Bayi Road, Wuchang District, Wuhan, Hubei 430072, P.R. China
样本信息
编号:
OESV000041
采样时间:
2020-01-02
采样地点:
Asia / China / Hubei / Wuhan
地点补充信息:
-
采样单位:
State Key Laboratory of Virology, Wuhan University
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020