系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000078
发布时间:
2020-02-05
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Hangzhou/HZCDC0001/2020
毒株别名:
-
病毒说明:
hCoV-19/Hangzhou/HZCDC0001/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29836
有效碱基数量:
29836
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Patient infected in Wuhan, China
分离来源:
Sputum
测序技术:
Nanopore MinION
组装方法:
artic-ncov2019 and Geneious 11.1.5
覆盖度:
> 20000x (average)
相关链接:
EPI_ISL_407313
提交者:
Jun Li, Haoqiu Wang, Hua Yu, Lingfeng Mao, Xinfen Yu, Zhou Sun, Qingxin Kong, Xin Qian, Shuchang Chen, Xuchu Wang
提交者单位:
Hangzhou Center for Disease Control and Prevention
提交者地址:
568 Mingshi Road, Jianggan District310021 HangzhouChina
样本信息
编号:
OESV000078
采样时间:
2020-01-19
采样地点:
Asia / China / Zhejiang / Hangzhou
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
32
采样单位:
Hangzhou Center for Disease Control and Prevention
采样地址:
568 Mingshi Road, Jianggan District310021 HangzhouChina
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020