系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000088
发布时间:
2020-02-24
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/HongKong/VM20001061-2/2020
毒株别名:
-
病毒说明:
hCoV-19/HongKong/VM20001061-2/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29851
有效碱基数量:
29850
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Nasopharyngeal aspirate & Throat swab
测序技术:
Illumina Miseq
组装方法:
BWA 0.7.17-r1188
覆盖度:
>10000x
相关链接:
EPI_ISL_412028
提交者:
Dominic N.C. Tsang, Daniel K.W. Chu, Leo L.M. Poon, Malik Peiris
提交者单位:
School of Public Health, The University of Hon g Kong
提交者地址:
21 Sassoon Road, Pokfulam, Hong Kong
样本信息
编号:
OESV000088
采样时间:
2020-01-22
采样地点:
Asia / Hong Kong
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
39
采样单位:
Hong Kong Department of Health
采样地址:
382 Nam Cheong Street, Public Health Laboratory Centre, Hong Kong, Hong Kong (SAR)
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020