系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000110
发布时间:
2020-03-06
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/India/MH-1-31/2020
毒株别名:
-
病毒说明:
hCoV-19/India/MH-1-31/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29851
有效碱基数量:
29851
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Travel history to China
分离来源:
Throat Swab
测序技术:
Illumina Miniseq
组装方法:
CLC Genomics Workbench 11
覆盖度:
-
相关链接:
EPI_ISL_413523
提交者:
Potdar V, Yadav PD, Choudhary ML, Shete-Aich A
提交者单位:
National Influenza Center, Indian Council of Medical Research-National Institute of Virology
提交者地址:
National Influenza Center,20-A, Dr. Ambedkar Road, Pune, Maharashtra, India 411001
样本信息
编号:
OESV000110
采样时间:
2020-01-31
采样地点:
Asia / India / Maharashtra
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
23
采样单位:
Indian Council of Medical Research-National Institute of Virology
采样地址:
Maximum Containment Facility, Sus-Pashan Road, Pune, Maharashtra, India
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020