系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000127
发布时间:
2020-02-10
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Japan/TY-WK-521/2020
毒株别名:
-
病毒说明:
hCoV-19/Japan/TY-WK-521/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29878
有效碱基数量:
29878
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Pharyngeal swab
测序技术:
NextSeq500
组装方法:
A5-miseq v. 20140604
覆盖度:
1500x
相关链接:
EPI_ISL_408667
提交者:
Tsuyoshi Sekizuka, Shutoku Matsuyama, Naganori Nao, Kazuya Shirato, Makoto Takeda, Makoto Kuroda
提交者单位:
Pathogen Genomics Center, National Institute of Infectious Diseases
提交者地址:
1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
样本信息
编号:
OESV000127
采样时间:
2020-01-31
采样地点:
Asia / Japan / Tokyo
地点补充信息:
-
采样单位:
Dept. of Virology III, National Institute of Infectious Diseases
采样地址:
4-7-1 Gakuen, Musashi-Murayama, Tokyo 208-0011, Japan
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020