系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000132
发布时间:
2020-02-09
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Jiangxi/IVDC-JX-002/2020
毒株别名:
-
病毒说明:
hCoV-19/Jiangxi/IVDC-JX-002/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29876
有效碱基数量:
29876
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Sputum
测序技术:
Illumina MiSeq; Nanopore
组装方法:
CLC Genomics Workbench 20.0.2
覆盖度:
-
相关链接:
EPI_ISL_408486
提交者:
Wenjie Tan, Yong Shi, Wenling Wang, Peihua Niu, Roujian Lu, Jianxiong Li, Xiang Zhao, Baoying Huang, Li Zhao, Fei Ye, Wenbo Xu, George F. Gao, Guizhen Wu
提交者单位:
National Institute for Viral Disease Control & Prevention, CCDC
提交者地址:
155 Changbai Road, Changping District102206 Beijing
样本信息
编号:
OESV000132
采样时间:
2020-01-11
采样地点:
Asia / China / Jiangxi / Pingxiang
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
50
采样单位:
National Institute for Viral Disease Control and Prevention, China CDC
采样地址:
155# Changbai Road, Changping District, Beijing, China
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020