系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000133
发布时间:
2020-02-26
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Jingzhou/HBCDC-HB-01/2020
毒株别名:
-
病毒说明:
hCoV-19/Jingzhou/HBCDC-HB-01/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29848
有效碱基数量:
29848
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Patient infected in Wuhan, China
分离来源:
Alveolar lavage fluid
测序技术:
Illumina iSeq
组装方法:
CLC Genomics Workbench 12 and Geneious 12.0.1
覆盖度:
-
相关链接:
EPI_ISL_412459
提交者:
Bin Fang, Xiang Li, Xiao Yu, Linlin Liu, Bo Yang, Faxian Zhan, Guojun Ye, Xixiang Huo, Junqiang Xu, Bo Yu, Kun Cai, Jing Li, Maoyi Chen,Jie Hu, Chunlin Mao, Yongzhong Jiang.
提交者单位:
Hubei Provincial Center for Disease Control and Prevention
提交者地址:
Zhuo Dao Quan Bei Lu , Hongshan District, Wuhan City, 430079 Wuhan, China
样本信息
编号:
OESV000133
采样时间:
2020-01-08
采样地点:
Asia / China / Hubei / Jingzhou
地点补充信息:
South China seafood market related
宿主编号:
-
宿主性别:
Male
宿主年龄:
47
采样单位:
Jingzhou Center for Disease Control and Prevention
采样地址:
91 Yuanlin Road, Shashi District, Jingzhou City, 434000 Jingzhou
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020