系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000147
发布时间:
2020-01-17
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Thailand/61/2020
毒株别名:
-
病毒说明:
hCoV-19/Thailand/61/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29848
有效碱基数量:
29848
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Patient came from Wuhan, China
分离来源:
Nasopharyngeal swab and Throat swab
测序技术:
Illumina Miseq
组装方法:
CLC Genomics Workbench 12 and Geneious 10.2.4
覆盖度:
-
相关链接:
EPI_ISL_403962
提交者:
Pilailuk,Okada; Siripaporn,Phuygun; Thanutsapa,Thanadachakul; Supaporn,Wacharapluesadee; Sittiporn,Parnmen; Warawan,Wongboot; Sunthareeya,Waicharoen; Rome,Buathong; Malinee,Chittaganpitch; Nanthawan,Mekha
提交者单位:
1. Department of Medical Sciences, Ministry of Public Health, Thailand 2. Thai Red Cross Emerging Infectious Diseases - Health Science Centre 3. Department of Disease Control, Ministry of Public Health, Thailand
提交者地址:
88/7 Tiwanon Road, Amphoe Muang, Nonthaburi 11000, Thailand
样本信息
编号:
OESV000147
采样时间:
2020-01-08
采样地点:
Asia / Thailand / Nonthaburi
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
61
采样单位:
Bamrasnaradura Hospital
采样地址:
38/4 Tiwanon Rd, Tambon Talat Kwan, Mueang, Nonthaburi 11000, Thailand
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020