系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000190
发布时间:
2020-02-18
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Singapore/9/2020
毒株别名:
-
病毒说明:
hCoV-19/Singapore/9/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29891
有效碱基数量:
29891
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Nasopharyngeal swab
测序技术:
Illumina Miseq
组装方法:
Spades v3.6.1
覆盖度:
250x
相关链接:
EPI_ISL_410715
提交者:
Octavia S, Mak TM, Cui L, Lin RTP
提交者单位:
National Public Health Laboratory, National Centre for Infectious Diseases
提交者地址:
Blk G, Level 13, 16 Jalan Tan Tock Seng, Singapore 308442
样本信息
编号:
OESV000190
采样时间:
2020-02-04
采样地点:
Asia / Singapore
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
45
采样单位:
National Public Health Laboratory, National Centre for Infectious Diseases
采样地址:
Blk G, Level 13, 16 Jalan Tan Tock Seng, Singapore 308442
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020