系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000194
发布时间:
2020-02-20
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Sweden/01/2020
毒株别名:
-
病毒说明:
hCoV-19/Sweden/01/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29886
有效碱基数量:
29886
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
IonTorrent
组装方法:
CLC Genomics Workbench v. 12.0.3
覆盖度:
100X
相关链接:
EPI_ISL_411951
提交者:
Bengner,M., Palmerus,M., Lindsjo,O., Lind Karlberg,M., Monteil,V., Appelberg,S., Brave,A., Muradrasoli,S. and Tegmark-Wisell,K.
提交者单位:
Unit for Laboratory Development and Technology Transfer, Public Health Agency of Sweden
提交者地址:
Folkhalsomyndigheten, Tomtebodavagen 12 B, Solna, Uppland 17165, Sweden
样本信息
编号:
OESV000194
采样时间:
2020-02-07
采样地点:
Europe / Sweden
地点补充信息:
-
采样单位:
Unit for Laboratory Development and Technology Transfer, Public Health Agency of Sweden
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020