系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000228
发布时间:
2020-03-04
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/USA/WA4-UW2/2020
毒株别名:
-
病毒说明:
hCoV-19/USA/WA4-UW2/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29897
有效碱基数量:
29897
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina Miseq
组装方法:
Geneious Prime 2020.0.5
覆盖度:
750x average
相关链接:
EPI_ISL_413455
提交者:
Pavitra Roychoudhury, Arun Nalla, Hong Xie, Keith Jerome, Alexander Greninger
提交者单位:
University of Washington Virology Lab
提交者地址:
Seattle, WA 98102-1024
样本信息
编号:
OESV000228
采样时间:
2020-02-28
采样地点:
North America / USA / Washington
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
-
采样单位:
Washington State Public Health Lab
采样地址:
1610 NE 150th Street, Shoreline, WA 98155
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020