系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000237
发布时间:
2020-02-28
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Wuhan/HBCDC-HB-02/2019
毒株别名:
-
病毒说明:
hCoV-19/Wuhan/HBCDC-HB-02/2019
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29848
有效碱基数量:
29848
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Patient infected in Wuhan, China
分离来源:
Alveolar lavage fluid
测序技术:
Illumina Miseq
组装方法:
CLC Genomics Workbench 12 and Geneious 12.0.1
覆盖度:
-
相关链接:
EPI_ISL_412898
提交者:
Bin Fang, Xiang Li, Xiao Yu, Linlin Liu, Bo Yang, Faxian Zhan, Guojun Ye, Xixiang Huo, Junqiang Xu, Bo Yu, Kun Cai, Jing Li, Yongzhong Jiang.
提交者单位:
Hubei Provincial Center for Disease Control and Prevention
提交者地址:
Zhuo Dao Quan Bei Lu , Hongshan District, Wuhan City430079 WuhanChina
样本信息
编号:
OESV000237
采样时间:
2019-12-30
采样地点:
Asia / China / Hubei / Wuhan
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
-
采样单位:
Wuhan Jinyintan Hospital
采样地址:
1 Yintan Road, Dongxihu District, Wuhan City, Hubei Province, China, 430011
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020