系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000256
发布时间:
2020-02-09
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/env/Wuhan/IVDC-HBF13/2020
毒株别名:
-
病毒说明:
hCoV-19/env/Wuhan/IVDC-HBF13/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
28557
有效碱基数量:
28550
有效碱基百分比:
99.98%
宿主:
environmental samples
宿主补充信息:
-
分离来源:
-
测序技术:
NGS
组装方法:
-
覆盖度:
25.6
相关链接:
EPI_ISL_408511
提交者:
William J. Liu, Peipei Liu, Xiang Zhao, Peihua Niu, Yingze Zhao, Wenwen Lei, Ziqian Xu, Beiwei Ye, Weifeng Shi, Roujian Lu, Wenjie Tan, Zhixiao Chen, Yuchao Wu, Juan Song, Dayan Wang, Jun Han, Wenbo Xu, George F. Gao, Guizhen Wu
提交者单位:
Institute of Viral Disease Control and Prevention, China CDC
提交者地址:
155 Changbai Road, Changping District, 102206 Beijing
样本信息
编号:
OESV000256
采样时间:
2020-01-01
采样地点:
Asia / China / Hubei / Wuhan
地点补充信息:
Huanan Seafood Market
宿主编号:
-
宿主性别:
-
宿主年龄:
n/a
采样单位:
Institute of Viral Disease Control and Prevention, China CDC
采样地址:
155 Changbai Road, Changping District, 102206 Beijing
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020