系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000264
发布时间:
2020-01-18
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Wuhan/WIV02/2019
毒株别名:
-
病毒说明:
hCoV-19/Wuhan/WIV02/2019
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29825
有效碱基数量:
29825
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
5' and 3' Race was not performed
分离来源:
Bronchoalveolar lavage fluid
测序技术:
Illumina MiSeq, MGISEQ 2000
组装方法:
Geneious v11.0.3, MEGAHIT v1.2.9
覆盖度:
-
相关链接:
EPI_ISL_402127
提交者:
Peng Zhou, Xing-Lou Yang, Ding-Yu Zhang, Lei Zhang, Yan Zhu, Hao-Rui Si, Zhengli Shi
提交者单位:
Wuhan Institute of Virology, Chinese Academy of Sciences
提交者地址:
44 Xiao Hong Shan, Wuhan, Hubei 430071
样本信息
编号:
OESV000264
采样时间:
2019-12-30
采样地点:
Asia / China / Hubei / Wuhan
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
32
采样单位:
Wuhan Jinyintan Hospital
采样地址:
1st Yintan road, Dongxihu district, Wuhan
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020