系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000287
发布时间:
2020-02-17
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Japan/NA-20-05-1/2020
毒株别名:
-
病毒说明:
hCoV-19/Japan/NA-20-05-1/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29878
有效碱基数量:
29878
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Sputum
测序技术:
NextSeq500, iSeq
组装方法:
A5-miseq v. 20140604
覆盖度:
500x
相关链接:
EPI_ISL_410531
提交者:
Tsuyoshi Sekizuka, Harutaka Katano, Shutoku Matsuyama, Naganori Nao, Kazuya Shirato, Motoi Suzuki, Hideki Hasegawa, Takaji Wakita, Makoto Takeda, Tadaki Suzuki, Makoto Kuroda
提交者单位:
Pathogen Genomics Center, National Institute of Infectious Diseases
提交者地址:
1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
样本信息
编号:
OESV000287
采样时间:
2020-01-25
采样地点:
Asia / Japan / Nara
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
60-70
采样单位:
Dept. of Pathology, National Institute of Infectious Diseases
采样地址:
1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020