系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000504
发布时间:
2020-03-07
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/USA/WA-S3/2020
毒株别名:
-
病毒说明:
hCoV-19/USA/WA-S3/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29868
有效碱基数量:
29868
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Mid-Turbinate nasal swab
测序技术:
Illumina Nextseq
组装方法:
Seattle Flu Assembly Pipeline
覆盖度:
7,655X
相关链接:
EPI_ISL_413560
提交者:
Chu et al
提交者单位:
Seattle Flu Study
提交者地址:
University of Washington Medical Center, 1959 NE Pacific Street, Seattle, WA 98195, USA
样本信息
编号:
OESV000504
采样时间:
2020-02-28
采样地点:
North America / USA / Washington
地点补充信息:
-
采样单位:
Seattle Flu Study
采样地址:
University of Washington Medical Center, 1959 NE Pacific Street, Seattle, WA 98195, USA
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020