系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV013512
发布时间:
2019-02-12
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
BatRVA/KEN/BATp39/Rousettus aegyptiacus/2015 VP1 protein (VP1) gene
毒株别名:
-
病毒说明:
Bat rotavirus isolate BatRVA/KEN/BATp39/Rousettus aegyptiacus/2015 VP1 protein (VP1) gene, complete cds
物种名称:
Bat rotavirus
物种ID:
1340801
属名:
Rotavirus
分类谱系:
[root, Viruses, Riboviria, Reoviridae, Sedoreovirinae, Rotavirus, unclassified Rotavirus, Bat rotavirus]
序列长度:
3267
有效碱基数量:
3267
有效碱基百分比:
100.00%
基因型:
-
所在片段:
1
宿主:
Rousettus aegyptiacus
宿主补充信息:
-
分离来源:
feces
测序技术:
Illumina; Sanger dideoxy sequencing
组装方法:
Geneious v. v11.1.2
覆盖度:
-
相关链接:
NC_040414
提交者:
Waruhiu,C.N., Ommeh,S.C., Xing-Lou,Y., Ge,X.-Y., Hu,B., Agwanda,B., Obanda,V., Zohaib,A., Jiang,R.-D., Liu,X.-L., Zhu,Y. and Shi,Z.-L.
提交者单位:
Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences
提交者地址:
44 Xiao Hong Shan, Wuhan, Hubei 430071, China
样本信息
编号:
OESV013512
采样时间:
2015-03-01
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020