系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV016739
发布时间:
2016-01-05
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
BtRf-AlphaCoV/YN2012
毒株别名:
-
病毒说明:
BtRf-AlphaCoV/YN2012, complete genome
物种名称:
BtRf-AlphaCoV/YN2012
物种ID:
1503293
属名:
Alphacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Alphacoronavirus, unclassified Alphacoronavirus, BtRf-AlphaCoV/YN2012]
序列长度:
26975
有效碱基数量:
26975
有效碱基百分比:
100.00%
宿主:
Rhinolophus ferrumequinum
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina
组装方法:
Seqman v. 5.00
覆盖度:
-
相关链接:
NC_028824
提交者:
Yang,L., Wu,Z. and Jin,Q.
提交者单位:
MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology
提交者地址:
No. 6, Rongjing East Street, BDA, Beijing, Beijing 100176, China
样本信息
编号:
OESV016739
采样时间:
2012-01-01
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020